Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.21□□□□□ -1.9
TRIM4Q9C037 AC092447.7-201ENST00000422212 1621 ntBASIC3.21□□□□□ -1.9
TRIM4Q9C037 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.21□□□□□ -1.9
TRIM4Q9C037 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
TRIM4Q9C037 RNF6P1-201ENST00000444889 1784 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.2□□□□□ -1.9
TRIM4Q9C037 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
TRIM4Q9C037 RNA5SP197-201ENST00000363357 119 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 RNU6-1251P-201ENST00000364502 107 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC3.2□□□□□ -1.9
TRIM4Q9C037 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.2□□□□□ -1.9
TRIM4Q9C037 RN7SKP111-201ENST00000410349 271 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 AC245054.2-201ENST00000415639 319 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 HMGB1P12-201ENST00000438594 598 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 RPL39P40-201ENST00000445481 146 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 RSL24D1P2-201ENST00000445584 366 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 AC097262.1-201ENST00000452559 548 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 RNU7-27P-201ENST00000459281 62 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.2□□□□□ -1.9
TRIM4Q9C037 RPL21P103-201ENST00000479921 488 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 HMGB1P21-201ENST00000502313 581 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.2□□□□□ -1.9
TRIM4Q9C037 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.2□□□□□ -1.9
TRIM4Q9C037 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
TRIM4Q9C037 AC239860.2-201ENST00000525886 270 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 AC113192.3-201ENST00000529152 742 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.2□□□□□ -1.9
TRIM4Q9C037 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.2□□□□□ -1.9
TRIM4Q9C037 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.2□□□□□ -1.9
TRIM4Q9C037 AC138932.5-201ENST00000617759 563 ntBASIC3.2□□□□□ -1.9
TRIM4Q9C037 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
TRIM4Q9C037 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
TRIM4Q9C037 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
TRIM4Q9C037 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.19□□□□□ -1.9
TRIM4Q9C037 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
TRIM4Q9C037 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
TRIM4Q9C037 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
TRIM4Q9C037 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 SNORA46-201ENST00000384762 135 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 AL354719.1-201ENST00000406535 843 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 GLS-203ENST00000409215 632 ntTSL 4 BASIC3.19□□□□□ -1.9
TRIM4Q9C037 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.19□□□□□ -1.9
TRIM4Q9C037 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.19□□□□□ -1.9
TRIM4Q9C037 AL356968.1-201ENST00000416622 474 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.19□□□□□ -1.9
TRIM4Q9C037 OR2AS1P-201ENST00000427827 319 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.19□□□□□ -1.9
TRIM4Q9C037 AL353898.1-201ENST00000444055 238 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.19□□□□□ -1.9
TRIM4Q9C037 Z75741.1-201ENST00000446793 314 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC3.19□□□□□ -1.9
TRIM4Q9C037 NPM1P49-201ENST00000448027 714 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 AC068724.1-201ENST00000487100 792 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 AC006445.1-201ENST00000491925 405 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 APOOP4-201ENST00000513530 597 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 AC026801.2-201ENST00000515352 425 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 SCARNA20.6-201ENST00000517251 106 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 IGKV2-26-201ENST00000518305 343 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC3.19□□□□□ -1.9
TRIM4Q9C037 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC3.19□□□□□ -1.9
TRIM4Q9C037 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.19□□□□□ -1.9
TRIM4Q9C037 MIR5004-201ENST00000579078 107 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 AC012119.1-201ENST00000603184 222 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC3.19□□□□□ -1.9
TRIM4Q9C037 AC107871.2-201ENST00000612894 502 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC3.19□□□□□ -1.9
TRIM4Q9C037 ZNF90P1-201ENST00000480493 1951 ntBASIC3.19□□□□□ -1.9
TRIM4Q9C037 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
TRIM4Q9C037 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
TRIM4Q9C037 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
TRIM4Q9C037 AC009487.2-201ENST00000420969 6821 ntBASIC3.18□□□□□ -1.9
TRIM4Q9C037 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.18□□□□□ -1.9
TRIM4Q9C037 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
TRIM4Q9C037 AL357075.1-201ENST00000404107 726 ntBASIC3.18□□□□□ -1.9
TRIM4Q9C037 AL353678.1-201ENST00000422735 741 ntBASIC3.18□□□□□ -1.9
TRIM4Q9C037 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.18□□□□□ -1.9
TRIM4Q9C037 AC008264.1-201ENST00000447612 367 ntBASIC3.18□□□□□ -1.9
TRIM4Q9C037 RPS3AP43-201ENST00000479743 781 ntBASIC3.18□□□□□ -1.9
TRIM4Q9C037 OR2A20P-203ENST00000498397 1268 ntBASIC3.18□□□□□ -1.9
TRIM4Q9C037 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.18□□□□□ -1.9
TRIM4Q9C037 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.18□□□□□ -1.9
TRIM4Q9C037 AC103783.1-201ENST00000520506 373 ntBASIC3.18□□□□□ -1.9
TRIM4Q9C037 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.18□□□□□ -1.9
TRIM4Q9C037 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.18□□□□□ -1.9
TRIM4Q9C037 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.18□□□□□ -1.9
TRIM4Q9C037 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.18□□□□□ -1.9
TRIM4Q9C037 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.18□□□□□ -1.9
TRIM4Q9C037 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.18□□□□□ -1.9
TRIM4Q9C037 MIR4276-201ENST00000584832 70 ntBASIC3.18□□□□□ -1.9
TRIM4Q9C037 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
TRIM4Q9C037 LLPHP1-201ENST00000603571 367 ntBASIC3.18□□□□□ -1.9
TRIM4Q9C037 AL162713.1-201ENST00000604480 262 ntBASIC3.18□□□□□ -1.9
TRIM4Q9C037 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC3.18□□□□□ -1.9
TRIM4Q9C037 AC084036.1-201ENST00000609190 508 ntBASIC3.18□□□□□ -1.9
TRIM4Q9C037 MIR6733-201ENST00000635723 61 ntBASIC3.18□□□□□ -1.9
TRIM4Q9C037 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
TRIM4Q9C037 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
TRIM4Q9C037 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.18□□□□□ -1.9
TRIM4Q9C037 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms