Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL079343.1-201ENST00000572358 1771 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXA1P49639 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXA1P49639 USP8P1-201ENST00000494673 3183 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXA1P49639 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
HOXA1P49639 MTCO1P23-201ENST00000415223 1526 ntBASIC3.65□□□□□ -1.83
HOXA1P49639 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA1P49639 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXA1P49639 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
HOXA1P49639 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA1P49639 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA1P49639 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA1P49639 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.64□□□□□ -1.83
HOXA1P49639 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA1P49639 RNU5F-6P-201ENST00000362979 116 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXA1P49639 DEFB108C-201ENST00000400154 252 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA1P49639 HMGB1P11-201ENST00000413899 637 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 RPS3AP9-201ENST00000417027 792 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 AC140479.3-201ENST00000418944 1126 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA1P49639 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA1P49639 RPS12P10-201ENST00000427031 377 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 AL035410.1-201ENST00000427409 427 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 MTCO3P5-201ENST00000433620 714 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA1P49639 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA1P49639 AL831737.1-201ENST00000441288 271 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 COX6CP2-201ENST00000444980 225 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA1P49639 ELOCP30-201ENST00000447108 299 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 HMGB3P8-201ENST00000449709 577 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA1P49639 RPL7P22-201ENST00000466005 733 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 RN7SL330P-201ENST00000469709 307 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 MTND6P6-201ENST00000478031 263 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 HMGB1P36-201ENST00000487709 576 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 AC017037.1-201ENST00000508460 471 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA1P49639 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA1P49639 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA1P49639 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA1P49639 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA1P49639 AP000676.2-201ENST00000529711 301 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 ZNF705CP-201ENST00000530515 889 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 AC013828.2-201ENST00000532487 235 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 AP001880.2-201ENST00000538233 448 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA1P49639 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA1P49639 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA1P49639 LSM6P2-201ENST00000552208 177 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.64□□□□□ -1.83
HOXA1P49639 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXA1P49639 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA1P49639 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXA1P49639 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXA1P49639 BNIP3P23-201ENST00000599655 511 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 AC012065.4-201ENST00000602445 679 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 AC004987.4-201ENST00000603383 338 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 YWHAQP7-201ENST00000603536 658 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 SDR42E1P1-201ENST00000611327 477 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 AC068722.2-201ENST00000618734 544 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 AC068870.2-201ENST00000620635 389 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 U3.53-201ENST00000628922 216 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 AC244205.2-202ENST00000635781 342 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
HOXA1P49639 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXA1P49639 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
HOXA1P49639 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA1P49639 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
HOXA1P49639 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXA1P49639 AL139811.1-201ENST00000424779 2299 ntBASIC3.64□□□□□ -1.83
HOXA1P49639 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXA1P49639 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
HOXA1P49639 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXA1P49639 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXA1P49639 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXA1P49639 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
HOXA1P49639 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
HOXA1P49639 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
HOXA1P49639 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXA1P49639 RNU6-501P-201ENST00000364072 100 ntBASIC3.63□□□□□ -1.83
HOXA1P49639 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXA1P49639 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
HOXA1P49639 RNY3P10-201ENST00000384764 102 ntBASIC3.63□□□□□ -1.83
HOXA1P49639 RNU6-952P-201ENST00000391164 108 ntBASIC3.63□□□□□ -1.83
HOXA1P49639 PTMAP5-201ENST00000393073 333 ntBASIC3.63□□□□□ -1.83
HOXA1P49639 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXA1P49639 AL355379.1-201ENST00000405542 640 ntBASIC3.63□□□□□ -1.83
HOXA1P49639 RPL30P2-201ENST00000414021 291 ntBASIC3.63□□□□□ -1.83
HOXA1P49639 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXA1P49639 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXA1P49639 AL031779.1-201ENST00000415663 330 ntBASIC3.63□□□□□ -1.83
HOXA1P49639 AC119751.6-201ENST00000416712 186 ntBASIC3.63□□□□□ -1.83
HOXA1P49639 AC083875.1-201ENST00000419509 405 ntBASIC3.63□□□□□ -1.83
HOXA1P49639 RPS15AP40-201ENST00000419621 391 ntBASIC3.63□□□□□ -1.83
HOXA1P49639 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXA1P49639 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms