Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 HMGN2P13-201ENST00000476476 274 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 AC007686.1-201ENST00000488511 463 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 RN7SL604P-201ENST00000492589 296 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 AC139365.2-201ENST00000517972 253 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 AC134698.5-201ENST00000519444 336 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC6.62□□□□□ -1.35
COL9A1P20849 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC6.62□□□□□ -1.35
COL9A1P20849 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC6.62□□□□□ -1.35
COL9A1P20849 HMGN2P6-201ENST00000551091 273 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 AC004232.1-201ENST00000571388 208 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 AC024614.2-201ENST00000577584 372 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 MIR5696-201ENST00000578474 85 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC6.62□□□□□ -1.35
COL9A1P20849 AC139493.1-201ENST00000604368 397 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 AL354718.1-201ENST00000619764 589 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 RNU6-156P-201ENST00000621869 107 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 AC097372.5-201ENST00000623665 376 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 U6.92-201ENST00000636464 89 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC6.62□□□□□ -1.35
COL9A1P20849 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC6.62□□□□□ -1.35
COL9A1P20849 BTK-209ENST00000618050 2417 ntTSL 5 BASIC6.62□□□□□ -1.35
COL9A1P20849 YES1-203ENST00000577961 4554 ntTSL 5 BASIC6.62□□□□□ -1.35
COL9A1P20849 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC6.62□□□□□ -1.35
COL9A1P20849 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC6.62□□□□□ -1.35
COL9A1P20849 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
COL9A1P20849 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.62□□□□□ -1.35
COL9A1P20849 KRBOX1-202ENST00000418176 2566 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
COL9A1P20849 MEF2C-217ENST00000510942 3446 ntTSL 5 BASIC6.62□□□□□ -1.35
COL9A1P20849 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL9A1P20849 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL9A1P20849 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
COL9A1P20849 AC007993.1-201ENST00000621298 2430 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL9A1P20849 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
COL9A1P20849 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL9A1P20849 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC6.61□□□□□ -1.35
COL9A1P20849 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
COL9A1P20849 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL9A1P20849 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL9A1P20849 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
COL9A1P20849 NACA-203ENST00000454682 6629 ntTSL 5 BASIC6.61□□□□□ -1.35
COL9A1P20849 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL9A1P20849 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL9A1P20849 RNU6-215P-201ENST00000365169 102 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 RNU6-1135P-201ENST00000411083 103 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 AL359092.1-201ENST00000417156 265 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 AL035660.1-201ENST00000422041 222 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC6.61□□□□□ -1.35
COL9A1P20849 CFL1P1-202ENST00000432948 411 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 AC010733.1-201ENST00000451515 401 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC6.61□□□□□ -1.35
COL9A1P20849 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC6.61□□□□□ -1.35
COL9A1P20849 RNU6-496P-201ENST00000516145 99 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 RNA5SP206-201ENST00000516703 121 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 RNU6-352P-201ENST00000516908 107 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 RAB9BP1-201ENST00000519581 626 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC6.61□□□□□ -1.35
COL9A1P20849 AC092470.1-201ENST00000546187 132 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 AL110118.1-201ENST00000553543 400 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.61□□□□□ -1.35
COL9A1P20849 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL9A1P20849 AL162424.1-201ENST00000602325 221 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 AC091768.1-201ENST00000609258 930 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 TUG1_2.1-201ENST00000614234 87 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 AC068870.2-201ENST00000620635 389 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 AC091895.1-201ENST00000624494 256 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
COL9A1P20849 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL9A1P20849 AC012213.2-201ENST00000562917 4597 ntBASIC6.61□□□□□ -1.35
COL9A1P20849 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.61□□□□□ -1.35
COL9A1P20849 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL9A1P20849 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL9A1P20849 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC6.61□□□□□ -1.35
COL9A1P20849 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC6.61□□□□□ -1.35
COL9A1P20849 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL9A1P20849 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL9A1P20849 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL9A1P20849 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL9A1P20849 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL9A1P20849 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC6.6□□□□□ -1.35
COL9A1P20849 SLC13A1-204ENST00000539873 2222 ntTSL 5 BASIC6.6□□□□□ -1.35
COL9A1P20849 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC6.6□□□□□ -1.35
COL9A1P20849 BRD8-202ENST00000254900 4388 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL9A1P20849 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
COL9A1P20849 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL9A1P20849 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
COL9A1P20849 SNORD113-8-201ENST00000363497 74 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 Y_RNA.497-201ENST00000384447 98 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC6.6□□□□□ -1.35
COL9A1P20849 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC6.6□□□□□ -1.35
COL9A1P20849 Z92846.1-201ENST00000456203 268 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 RPL21P41-201ENST00000459863 264 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 AC005532.2-201ENST00000467154 373 ntBASIC6.6□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms