Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 BET1L-206ENST00000486280 665 ntTSL 3 BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 AC104819.1-201ENST00000504587 486 ntBASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 FBXW4P1-201ENST00000426721 2239 ntBASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
COL17A1Q9UMD9 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 MIR564-202ENST00000385049 94 ntBASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 AC074051.2-201ENST00000565115 352 ntBASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 AC024243.1-201ENST00000609234 778 ntBASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 PMS2P7-201ENST00000506558 1336 ntBASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 LINC00167-201ENST00000530583 1419 ntBASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 NME1-207ENST00000480143 964 ntTSL 2 BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 RPL18-209ENST00000550645 463 ntTSL 5 BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 RPL18-214ENST00000552588 559 ntTSL 3 BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 TK1-205ENST00000590862 642 ntTSL 3 BASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 AC148477.8-201ENST00000624298 468 ntBASIC29.17■■■□□ 2.26
COL17A1Q9UMD9 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL17A1Q9UMD9 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL17A1Q9UMD9 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL17A1Q9UMD9 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL17A1Q9UMD9 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC29.16■■■□□ 2.26
COL17A1Q9UMD9 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL17A1Q9UMD9 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC29.16■■■□□ 2.26
COL17A1Q9UMD9 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC29.16■■■□□ 2.26
COL17A1Q9UMD9 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL17A1Q9UMD9 MOK-208ENST00000519058 917 ntTSL 2 BASIC29.16■■■□□ 2.26
COL17A1Q9UMD9 CFL1-212ENST00000531413 636 ntTSL 3 BASIC29.16■■■□□ 2.26
COL17A1Q9UMD9 NAA38-203ENST00000575071 553 ntTSL 2 BASIC29.16■■■□□ 2.26
COL17A1Q9UMD9 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC29.16■■■□□ 2.26
COL17A1Q9UMD9 AL691403.2-201ENST00000618460 490 ntBASIC29.16■■■□□ 2.26
COL17A1Q9UMD9 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC29.16■■■□□ 2.26
COL17A1Q9UMD9 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
COL17A1Q9UMD9 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC29.15■■■□□ 2.26
COL17A1Q9UMD9 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL17A1Q9UMD9 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
COL17A1Q9UMD9 AC073648.2-201ENST00000510116 352 ntBASIC29.15■■■□□ 2.26
COL17A1Q9UMD9 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC29.15■■■□□ 2.26
COL17A1Q9UMD9 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC29.15■■■□□ 2.26
COL17A1Q9UMD9 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC29.15■■■□□ 2.26
COL17A1Q9UMD9 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL17A1Q9UMD9 BID-212ENST00000614949 1988 ntTSL 5 BASIC29.15■■■□□ 2.26
COL17A1Q9UMD9 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
COL17A1Q9UMD9 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
COL17A1Q9UMD9 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC29.14■■■□□ 2.26
COL17A1Q9UMD9 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC29.14■■■□□ 2.26
COL17A1Q9UMD9 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC29.14■■■□□ 2.26
COL17A1Q9UMD9 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
COL17A1Q9UMD9 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC29.14■■■□□ 2.26
COL17A1Q9UMD9 RNPS1P1-201ENST00000507437 918 ntBASIC29.14■■■□□ 2.26
COL17A1Q9UMD9 PGAM5P1-201ENST00000518923 814 ntBASIC29.14■■■□□ 2.26
COL17A1Q9UMD9 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC29.14■■■□□ 2.26
COL17A1Q9UMD9 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC29.14■■■□□ 2.26
COL17A1Q9UMD9 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
COL17A1Q9UMD9 AC140113.2-201ENST00000604370 208 ntBASIC29.14■■■□□ 2.26
COL17A1Q9UMD9 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
COL17A1Q9UMD9 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC29.14■■■□□ 2.25
COL17A1Q9UMD9 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC29.14■■■□□ 2.25
COL17A1Q9UMD9 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC29.14■■■□□ 2.25
COL17A1Q9UMD9 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC29.14■■■□□ 2.25
COL17A1Q9UMD9 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 SEC1P-202ENST00000473944 940 ntBASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 LINC00565-201ENST00000562710 2331 ntBASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC29.13■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms