Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 TSPY21P-201ENST00000433481 731 ntBASIC20.59■□□□□ 0.89
SIX4Q9UIU6 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 AC010947.1-201ENST00000623454 693 ntBASIC20.59■□□□□ 0.89
SIX4Q9UIU6 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.59■□□□□ 0.89
SIX4Q9UIU6 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SIX4Q9UIU6 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.58■□□□□ 0.89
SIX4Q9UIU6 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
SIX4Q9UIU6 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SIX4Q9UIU6 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SIX4Q9UIU6 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SIX4Q9UIU6 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.58■□□□□ 0.88
SIX4Q9UIU6 AC005332.7-201ENST00000614046 2005 ntBASIC20.58■□□□□ 0.88
SIX4Q9UIU6 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.58■□□□□ 0.88
SIX4Q9UIU6 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 AC211429.1-201ENST00000415277 523 ntBASIC20.57■□□□□ 0.88
SIX4Q9UIU6 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 PRSS44-201ENST00000515154 1146 ntBASIC20.57■□□□□ 0.88
SIX4Q9UIU6 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.57■□□□□ 0.88
SIX4Q9UIU6 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.56■□□□□ 0.88
SIX4Q9UIU6 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 AC012306.2-201ENST00000609350 630 ntBASIC20.56■□□□□ 0.88
SIX4Q9UIU6 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.56■□□□□ 0.88
SIX4Q9UIU6 AC141586.3-201ENST00000562166 1838 ntBASIC20.55■□□□□ 0.88
SIX4Q9UIU6 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.55■□□□□ 0.88
SIX4Q9UIU6 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SIX4Q9UIU6 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SIX4Q9UIU6 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SIX4Q9UIU6 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms