Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 AC010203.1-204ENST00000548782 407 ntBASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 AL023803.3-201ENST00000615559 522 ntBASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 AC092338.2-201ENST00000568827 1415 ntBASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLCF1Q9UBD9 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 AC010653.2-201ENST00000623505 997 ntBASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLCF1Q9UBD9 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLCF1Q9UBD9 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLCF1Q9UBD9 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLCF1Q9UBD9 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.33
CLCF1Q9UBD9 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CLCF1Q9UBD9 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLCF1Q9UBD9 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CLCF1Q9UBD9 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLCF1Q9UBD9 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
CLCF1Q9UBD9 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.33
CLCF1Q9UBD9 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.08■□□□□ 0.33
CLCF1Q9UBD9 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.08■□□□□ 0.33
CLCF1Q9UBD9 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
CLCF1Q9UBD9 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
CLCF1Q9UBD9 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 HMGA1P5-201ENST00000412453 271 ntBASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 AC007663.1-201ENST00000438948 1240 ntBASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLCF1Q9UBD9 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CLCF1Q9UBD9 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
CLCF1Q9UBD9 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CLCF1Q9UBD9 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CLCF1Q9UBD9 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.07■□□□□ 0.32
CLCF1Q9UBD9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.07■□□□□ 0.32
CLCF1Q9UBD9 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CLCF1Q9UBD9 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLCF1Q9UBD9 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.07■□□□□ 0.32
CLCF1Q9UBD9 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.07■□□□□ 0.32
CLCF1Q9UBD9 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLCF1Q9UBD9 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
CLCF1Q9UBD9 TSPY17P-201ENST00000450329 467 ntBASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms