Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
CNTN3Q9P232 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.71■□□□□ 0.91
CNTN3Q9P232 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CNTN3Q9P232 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CNTN3Q9P232 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CNTN3Q9P232 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CNTN3Q9P232 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.71■□□□□ 0.91
CNTN3Q9P232 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.71■□□□□ 0.91
CNTN3Q9P232 CCR12P-201ENST00000446203 998 ntBASIC20.71■□□□□ 0.91
CNTN3Q9P232 ECEL1P2-202ENST00000465689 757 ntBASIC20.71■□□□□ 0.91
CNTN3Q9P232 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
CNTN3Q9P232 AC116562.4-202ENST00000641738 218 ntBASIC20.71■□□□□ 0.91
CNTN3Q9P232 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.71■□□□□ 0.91
CNTN3Q9P232 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CNTN3Q9P232 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CNTN3Q9P232 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
CNTN3Q9P232 AC092338.2-201ENST00000568827 1415 ntBASIC20.7■□□□□ 0.9
CNTN3Q9P232 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CNTN3Q9P232 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CNTN3Q9P232 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CNTN3Q9P232 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CNTN3Q9P232 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.7■□□□□ 0.9
CNTN3Q9P232 TERF1P1-201ENST00000311003 1181 ntBASIC20.7■□□□□ 0.9
CNTN3Q9P232 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CNTN3Q9P232 AC005521.1-201ENST00000393351 872 ntBASIC20.7■□□□□ 0.9
CNTN3Q9P232 TSPY21P-201ENST00000433481 731 ntBASIC20.7■□□□□ 0.9
CNTN3Q9P232 TSPY23P-201ENST00000440136 739 ntBASIC20.7■□□□□ 0.9
CNTN3Q9P232 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
CNTN3Q9P232 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CNTN3Q9P232 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.7■□□□□ 0.9
CNTN3Q9P232 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CNTN3Q9P232 AC073508.3-201ENST00000619697 1419 ntBASIC20.7■□□□□ 0.9
CNTN3Q9P232 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CNTN3Q9P232 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CNTN3Q9P232 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CNTN3Q9P232 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.69■□□□□ 0.9
CNTN3Q9P232 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CNTN3Q9P232 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.69■□□□□ 0.9
CNTN3Q9P232 AC092865.7-201ENST00000641832 219 ntBASIC20.69■□□□□ 0.9
CNTN3Q9P232 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CNTN3Q9P232 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CNTN3Q9P232 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.69■□□□□ 0.9
CNTN3Q9P232 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CNTN3Q9P232 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.69■□□□□ 0.9
CNTN3Q9P232 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CNTN3Q9P232 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
CNTN3Q9P232 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CNTN3Q9P232 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.68■□□□□ 0.9
CNTN3Q9P232 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CNTN3Q9P232 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CNTN3Q9P232 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.68■□□□□ 0.9
CNTN3Q9P232 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CNTN3Q9P232 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CNTN3Q9P232 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CNTN3Q9P232 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CNTN3Q9P232 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CNTN3Q9P232 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.68■□□□□ 0.9
CNTN3Q9P232 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CNTN3Q9P232 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.68■□□□□ 0.9
CNTN3Q9P232 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.68■□□□□ 0.9
CNTN3Q9P232 AC007663.1-201ENST00000438948 1240 ntBASIC20.68■□□□□ 0.9
CNTN3Q9P232 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CNTN3Q9P232 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.68■□□□□ 0.9
CNTN3Q9P232 RN7SL850P-201ENST00000579959 291 ntBASIC20.68■□□□□ 0.9
CNTN3Q9P232 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.68■□□□□ 0.9
CNTN3Q9P232 AC010653.2-201ENST00000623505 997 ntBASIC20.68■□□□□ 0.9
CNTN3Q9P232 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.68■□□□□ 0.9
CNTN3Q9P232 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CNTN3Q9P232 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CNTN3Q9P232 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CNTN3Q9P232 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.68■□□□□ 0.9
CNTN3Q9P232 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CNTN3Q9P232 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CNTN3Q9P232 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.67■□□□□ 0.9
CNTN3Q9P232 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.67■□□□□ 0.9
CNTN3Q9P232 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTN3Q9P232 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.67■□□□□ 0.9
CNTN3Q9P232 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.67■□□□□ 0.9
CNTN3Q9P232 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTN3Q9P232 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTN3Q9P232 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTN3Q9P232 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTN3Q9P232 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTN3Q9P232 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTN3Q9P232 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTN3Q9P232 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.67■□□□□ 0.9
CNTN3Q9P232 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.67■□□□□ 0.9
CNTN3Q9P232 AL353719.1-201ENST00000566847 864 ntBASIC20.67■□□□□ 0.9
CNTN3Q9P232 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.67■□□□□ 0.9
CNTN3Q9P232 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTN3Q9P232 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CNTN3Q9P232 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
CNTN3Q9P232 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.67■□□□□ 0.9
CNTN3Q9P232 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CNTN3Q9P232 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.67■□□□□ 0.9
CNTN3Q9P232 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.67■□□□□ 0.9
CNTN3Q9P232 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.67■□□□□ 0.9
CNTN3Q9P232 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTN3Q9P232 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CNTN3Q9P232 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms