Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 AL135905.2-201ENST00000584934 1404 ntBASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 KSR1P1-201ENST00000446298 240 ntBASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 AC073195.1-201ENST00000607241 877 ntBASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 AC113410.3-201ENST00000623366 203 ntBASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 CR392000.1-201ENST00000624770 1228 ntBASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 AC133561.5-201ENST00000635547 218 ntBASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 FAM197Y1-201ENST00000421178 764 ntBASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 AL160286.2-201ENST00000567150 934 ntBASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 AL049637.2-201ENST00000641778 930 ntBASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CUEDC1Q9NWM3 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CUEDC1Q9NWM3 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CUEDC1Q9NWM3 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
CUEDC1Q9NWM3 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CUEDC1Q9NWM3 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CUEDC1Q9NWM3 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CUEDC1Q9NWM3 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CUEDC1Q9NWM3 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.58■□□□□ 0.57
CUEDC1Q9NWM3 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.58■□□□□ 0.57
CUEDC1Q9NWM3 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 AC004980.1-204ENST00000429707 299 ntBASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 CD177P1-201ENST00000606252 935 ntBASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 AC097493.4-201ENST00000641197 219 ntBASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 AL032819.2-201ENST00000624543 2162 ntBASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.58■□□□□ 0.56
CUEDC1Q9NWM3 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 KRT16P1-201ENST00000399124 1418 ntBASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 AC005332.7-201ENST00000614046 2005 ntBASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 MIR4785-201ENST00000585005 73 ntBASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.57■□□□□ 0.56
CUEDC1Q9NWM3 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms