Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
TDP1Q9NUW8 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TDP1Q9NUW8 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TDP1Q9NUW8 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TDP1Q9NUW8 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TDP1Q9NUW8 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TDP1Q9NUW8 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TDP1Q9NUW8 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.8■□□□□ 0.76
TDP1Q9NUW8 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 AC112907.3-201ENST00000577781 2400 ntBASIC19.79■□□□□ 0.76
TDP1Q9NUW8 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 AP000523.1-201ENST00000398242 1049 ntBASIC19.79■□□□□ 0.76
TDP1Q9NUW8 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
TDP1Q9NUW8 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.78■□□□□ 0.76
TDP1Q9NUW8 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TDP1Q9NUW8 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TDP1Q9NUW8 UPK3BP1-201ENST00000428678 509 ntBASIC19.77■□□□□ 0.76
TDP1Q9NUW8 TSPY21P-201ENST00000433481 731 ntBASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms