Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 RBM17P1-201ENST00000453646 1190 ntBASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 AC011298.2-201ENST00000617989 482 ntBASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.05■□□□□ 0.64
TRIM39Q9HCM9 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 AC091390.4-202ENST00000476426 537 ntBASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 BX088651.1-201ENST00000540551 451 ntBASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 DGCR10-201ENST00000609839 495 ntBASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM39Q9HCM9 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 AC008040.2-201ENST00000461049 708 ntBASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 AP000692.2-201ENST00000608391 879 ntBASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 KRT8P41-201ENST00000533985 1514 ntBASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 AL158211.5-201ENST00000623583 2518 ntBASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 AC079598.2-202ENST00000546624 1451 ntBASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.03■□□□□ 0.64
TRIM39Q9HCM9 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms