Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIME1Q9H400 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.87■□□□□ 0.29
LIME1Q9H400 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LIME1Q9H400 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
LIME1Q9H400 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIME1Q9H400 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LIME1Q9H400 AL031133.1-201ENST00000406807 723 ntBASIC16.87■□□□□ 0.29
LIME1Q9H400 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.87■□□□□ 0.29
LIME1Q9H400 TPM4P1-201ENST00000436100 807 ntBASIC16.87■□□□□ 0.29
LIME1Q9H400 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.87■□□□□ 0.29
LIME1Q9H400 AC128688.1-201ENST00000487626 519 ntBASIC16.87■□□□□ 0.29
LIME1Q9H400 C1QL1P1-201ENST00000568105 661 ntBASIC16.87■□□□□ 0.29
LIME1Q9H400 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.87■□□□□ 0.29
LIME1Q9H400 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC16.87■□□□□ 0.29
LIME1Q9H400 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.87■□□□□ 0.29
LIME1Q9H400 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
LIME1Q9H400 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIME1Q9H400 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LIME1Q9H400 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC16.87■□□□□ 0.29
LIME1Q9H400 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIME1Q9H400 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIME1Q9H400 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIME1Q9H400 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIME1Q9H400 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIME1Q9H400 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC16.87■□□□□ 0.29
LIME1Q9H400 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
LIME1Q9H400 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LIME1Q9H400 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LIME1Q9H400 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 AC018445.3-201ENST00000624177 1945 ntBASIC16.86■□□□□ 0.29
LIME1Q9H400 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.86■□□□□ 0.29
LIME1Q9H400 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
LIME1Q9H400 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 CALM3-202ENST00000391918 702 ntTSL 2 BASIC16.86■□□□□ 0.29
LIME1Q9H400 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.86■□□□□ 0.29
LIME1Q9H400 AC091390.4-202ENST00000476426 537 ntBASIC16.86■□□□□ 0.29
LIME1Q9H400 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 AL445675.2-201ENST00000620291 557 ntBASIC16.86■□□□□ 0.29
LIME1Q9H400 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC16.86■□□□□ 0.29
LIME1Q9H400 KRT8P20-201ENST00000423953 1409 ntBASIC16.86■□□□□ 0.29
LIME1Q9H400 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC16.86■□□□□ 0.29
LIME1Q9H400 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIME1Q9H400 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
LIME1Q9H400 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.85■□□□□ 0.29
LIME1Q9H400 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.85■□□□□ 0.29
LIME1Q9H400 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.85■□□□□ 0.29
LIME1Q9H400 KRT126P-201ENST00000549467 1181 ntBASIC16.85■□□□□ 0.29
LIME1Q9H400 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.85■□□□□ 0.29
LIME1Q9H400 SLC25A1P4-201ENST00000567977 778 ntBASIC16.85■□□□□ 0.29
LIME1Q9H400 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 MYC-208ENST00000641036 567 ntBASIC16.85■□□□□ 0.29
LIME1Q9H400 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
LIME1Q9H400 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC16.85■□□□□ 0.29
LIME1Q9H400 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.85■□□□□ 0.29
LIME1Q9H400 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.85■□□□□ 0.29
LIME1Q9H400 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC16.85■□□□□ 0.29
LIME1Q9H400 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC16.85■□□□□ 0.29
LIME1Q9H400 AP006587.1-201ENST00000534129 1502 ntBASIC16.85■□□□□ 0.29
LIME1Q9H400 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIME1Q9H400 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms