Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.29■■□□□ 1
CCDC113Q9H0I3 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CCDC113Q9H0I3 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.29■■□□□ 1
CCDC113Q9H0I3 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC113Q9H0I3 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC113Q9H0I3 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21.29■■□□□ 1
CCDC113Q9H0I3 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.29■■□□□ 1
CCDC113Q9H0I3 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CCDC113Q9H0I3 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC21.29■■□□□ 1
CCDC113Q9H0I3 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.29■■□□□ 1
CCDC113Q9H0I3 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
CCDC113Q9H0I3 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CCDC113Q9H0I3 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.28■■□□□ 1
CCDC113Q9H0I3 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC113Q9H0I3 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.28■■□□□ 1
CCDC113Q9H0I3 AC079598.2-202ENST00000546624 1451 ntBASIC21.28■■□□□ 1
CCDC113Q9H0I3 LINC01465-201ENST00000408887 1940 ntBASIC21.28■■□□□ 1
CCDC113Q9H0I3 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.28■■□□□ 1
CCDC113Q9H0I3 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
CCDC113Q9H0I3 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.28■■□□□ 1
CCDC113Q9H0I3 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC113Q9H0I3 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC21.28■■□□□ 1
CCDC113Q9H0I3 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.28■■□□□ 1
CCDC113Q9H0I3 MIR6786-201ENST00000616843 113 ntBASIC21.28■■□□□ 1
CCDC113Q9H0I3 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC113Q9H0I3 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CCDC113Q9H0I3 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.28■■□□□ 1
CCDC113Q9H0I3 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC113Q9H0I3 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC113Q9H0I3 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC21.28■■□□□ 1
CCDC113Q9H0I3 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC113Q9H0I3 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC113Q9H0I3 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CCDC113Q9H0I3 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC113Q9H0I3 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.27■■□□□ 1
CCDC113Q9H0I3 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC113Q9H0I3 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.27■■□□□ 1
CCDC113Q9H0I3 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC113Q9H0I3 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.27■■□□□ 1
CCDC113Q9H0I3 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC113Q9H0I3 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.27■■□□□ 1
CCDC113Q9H0I3 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC113Q9H0I3 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC113Q9H0I3 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC113Q9H0I3 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC113Q9H0I3 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC113Q9H0I3 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC113Q9H0I3 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.27■■□□□ 1
CCDC113Q9H0I3 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.27■■□□□ 1
CCDC113Q9H0I3 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.27■■□□□ 1
CCDC113Q9H0I3 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.27■■□□□ 1
CCDC113Q9H0I3 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.27■■□□□ 1
CCDC113Q9H0I3 AC073912.3-201ENST00000624414 853 ntBASIC21.27■■□□□ 1
CCDC113Q9H0I3 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
CCDC113Q9H0I3 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC113Q9H0I3 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC113Q9H0I3 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCDC113Q9H0I3 RCC2P6-201ENST00000526625 1557 ntBASIC21.27■□□□□ 0.99
CCDC113Q9H0I3 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CCDC113Q9H0I3 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 FSCN1P1-201ENST00000568912 1481 ntBASIC21.26■□□□□ 0.99
CCDC113Q9H0I3 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 AC008040.2-201ENST00000461049 708 ntBASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 AL160286.2-201ENST00000567150 934 ntBASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms