Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
RTFDC1Q9BY42 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
RTFDC1Q9BY42 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC23.39■■□□□ 1.33
RTFDC1Q9BY42 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC23.39■■□□□ 1.33
RTFDC1Q9BY42 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 RASA4DP-201ENST00000460726 1199 ntBASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
RTFDC1Q9BY42 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 AL645929.1-201ENST00000420084 975 ntBASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 SKP2-204ENST00000508514 821 ntTSL 3 BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 AC092119.3-201ENST00000612618 583 ntBASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 AC092667.1-201ENST00000434301 2586 ntBASIC23.37■■□□□ 1.33
RTFDC1Q9BY42 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 AC092597.1-201ENST00000487352 616 ntBASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
RTFDC1Q9BY42 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTFDC1Q9BY42 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
RTFDC1Q9BY42 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC23.35■■□□□ 1.33
RTFDC1Q9BY42 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTFDC1Q9BY42 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
RTFDC1Q9BY42 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC23.35■■□□□ 1.33
RTFDC1Q9BY42 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
RTFDC1Q9BY42 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTFDC1Q9BY42 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC23.35■■□□□ 1.33
RTFDC1Q9BY42 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
RTFDC1Q9BY42 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC23.35■■□□□ 1.33
RTFDC1Q9BY42 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTFDC1Q9BY42 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 MIR3180-1-201ENST00000580374 94 ntBASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 MIR3180-3-201ENST00000584616 94 ntBASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
RTFDC1Q9BY42 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms