Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
TIMP4Q99727 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TIMP4Q99727 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TIMP4Q99727 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TIMP4Q99727 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TIMP4Q99727 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.65■□□□□ 0.42
TIMP4Q99727 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.65■□□□□ 0.42
TIMP4Q99727 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TIMP4Q99727 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TIMP4Q99727 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TIMP4Q99727 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TIMP4Q99727 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.65■□□□□ 0.42
TIMP4Q99727 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
TIMP4Q99727 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
TIMP4Q99727 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.64■□□□□ 0.42
TIMP4Q99727 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TIMP4Q99727 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.64■□□□□ 0.42
TIMP4Q99727 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TIMP4Q99727 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TIMP4Q99727 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.64■□□□□ 0.41
TIMP4Q99727 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
TIMP4Q99727 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.64■□□□□ 0.41
TIMP4Q99727 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.64■□□□□ 0.41
TIMP4Q99727 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TIMP4Q99727 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.64■□□□□ 0.41
TIMP4Q99727 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.64■□□□□ 0.41
TIMP4Q99727 AC211429.1-201ENST00000415277 523 ntBASIC17.64■□□□□ 0.41
TIMP4Q99727 NUDT16P1-203ENST00000513809 620 ntBASIC17.64■□□□□ 0.41
TIMP4Q99727 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
TIMP4Q99727 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.64■□□□□ 0.41
TIMP4Q99727 AL032819.2-201ENST00000624543 2162 ntBASIC17.64■□□□□ 0.41
TIMP4Q99727 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
TIMP4Q99727 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TIMP4Q99727 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.64■□□□□ 0.41
TIMP4Q99727 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TIMP4Q99727 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TIMP4Q99727 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TIMP4Q99727 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.63■□□□□ 0.41
TIMP4Q99727 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TIMP4Q99727 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.63■□□□□ 0.41
TIMP4Q99727 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TIMP4Q99727 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TIMP4Q99727 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.63■□□□□ 0.41
TIMP4Q99727 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.63■□□□□ 0.41
TIMP4Q99727 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.63■□□□□ 0.41
TIMP4Q99727 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TIMP4Q99727 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TIMP4Q99727 KRT16P1-201ENST00000399124 1418 ntBASIC17.63■□□□□ 0.41
TIMP4Q99727 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TIMP4Q99727 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TIMP4Q99727 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
TIMP4Q99727 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.62■□□□□ 0.41
TIMP4Q99727 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TIMP4Q99727 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TIMP4Q99727 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TIMP4Q99727 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TIMP4Q99727 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
TIMP4Q99727 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TIMP4Q99727 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.62■□□□□ 0.41
TIMP4Q99727 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
TIMP4Q99727 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TIMP4Q99727 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.62■□□□□ 0.41
TIMP4Q99727 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TIMP4Q99727 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.62■□□□□ 0.41
TIMP4Q99727 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.62■□□□□ 0.41
TIMP4Q99727 ECEL1P3-201ENST00000427961 737 ntBASIC17.62■□□□□ 0.41
TIMP4Q99727 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TIMP4Q99727 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.62■□□□□ 0.41
TIMP4Q99727 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TIMP4Q99727 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.62■□□□□ 0.41
TIMP4Q99727 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TIMP4Q99727 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.62■□□□□ 0.41
TIMP4Q99727 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TIMP4Q99727 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TIMP4Q99727 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.62■□□□□ 0.41
TIMP4Q99727 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
TIMP4Q99727 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TIMP4Q99727 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.62■□□□□ 0.41
TIMP4Q99727 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TIMP4Q99727 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
TIMP4Q99727 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TIMP4Q99727 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
TIMP4Q99727 AP001271.2-201ENST00000624018 1556 ntBASIC17.62■□□□□ 0.41
TIMP4Q99727 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TIMP4Q99727 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC17.61■□□□□ 0.41
TIMP4Q99727 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
TIMP4Q99727 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.61■□□□□ 0.41
TIMP4Q99727 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.61■□□□□ 0.41
TIMP4Q99727 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.61■□□□□ 0.41
TIMP4Q99727 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
TIMP4Q99727 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TIMP4Q99727 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TIMP4Q99727 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TIMP4Q99727 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TIMP4Q99727 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
TIMP4Q99727 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TIMP4Q99727 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.61■□□□□ 0.41
TIMP4Q99727 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.61■□□□□ 0.41
TIMP4Q99727 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.61■□□□□ 0.41
TIMP4Q99727 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms