Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC42Q96M95 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CCDC42Q96M95 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC42Q96M95 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC42Q96M95 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC42Q96M95 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC42Q96M95 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC42Q96M95 AP006587.1-201ENST00000534129 1502 ntBASIC20.73■□□□□ 0.91
CCDC42Q96M95 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC42Q96M95 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC42Q96M95 AL031598.1-201ENST00000561511 1773 ntBASIC20.72■□□□□ 0.91
CCDC42Q96M95 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC42Q96M95 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC42Q96M95 KRT8P8-201ENST00000434750 1448 ntBASIC20.72■□□□□ 0.91
CCDC42Q96M95 IRX1P1-201ENST00000438849 1838 ntBASIC20.72■□□□□ 0.91
CCDC42Q96M95 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC42Q96M95 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC42Q96M95 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CCDC42Q96M95 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CCDC42Q96M95 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC42Q96M95 RAP2CP1-201ENST00000605103 478 ntBASIC20.72■□□□□ 0.91
CCDC42Q96M95 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
CCDC42Q96M95 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC42Q96M95 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC42Q96M95 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC42Q96M95 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC42Q96M95 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC42Q96M95 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC42Q96M95 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC42Q96M95 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC42Q96M95 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC42Q96M95 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC42Q96M95 FP475955.4-201ENST00000623131 1990 ntBASIC20.72■□□□□ 0.91
CCDC42Q96M95 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC42Q96M95 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC42Q96M95 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC42Q96M95 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC42Q96M95 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC42Q96M95 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC42Q96M95 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC20.71■□□□□ 0.91
CCDC42Q96M95 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC42Q96M95 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CCDC42Q96M95 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC42Q96M95 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.71■□□□□ 0.91
CCDC42Q96M95 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.71■□□□□ 0.91
CCDC42Q96M95 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC42Q96M95 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CCDC42Q96M95 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC42Q96M95 Z98044.1-201ENST00000632503 1764 ntBASIC20.71■□□□□ 0.91
CCDC42Q96M95 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC42Q96M95 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
CCDC42Q96M95 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
CCDC42Q96M95 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.7■□□□□ 0.91
CCDC42Q96M95 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 DUSP5P2-201ENST00000426873 1033 ntBASIC20.7■□□□□ 0.9
CCDC42Q96M95 CDCA4P2-201ENST00000441182 718 ntBASIC20.7■□□□□ 0.9
CCDC42Q96M95 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 YBX1P10-201ENST00000444752 975 ntBASIC20.7■□□□□ 0.9
CCDC42Q96M95 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 AC093525.10-201ENST00000625130 1569 ntBASIC20.7■□□□□ 0.9
CCDC42Q96M95 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 WIZP1-201ENST00000531444 2299 ntBASIC20.7■□□□□ 0.9
CCDC42Q96M95 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC42Q96M95 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CCDC42Q96M95 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC42Q96M95 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CCDC42Q96M95 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC42Q96M95 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC42Q96M95 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC42Q96M95 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC42Q96M95 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CCDC42Q96M95 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms