Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA1Q96BD8 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.71■□□□□ 0.75
SKA1Q96BD8 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA1Q96BD8 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA1Q96BD8 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA1Q96BD8 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SKA1Q96BD8 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA1Q96BD8 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA1Q96BD8 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SKA1Q96BD8 TSPY15P-201ENST00000457163 923 ntBASIC19.71■□□□□ 0.75
SKA1Q96BD8 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.71■□□□□ 0.75
SKA1Q96BD8 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.71■□□□□ 0.75
SKA1Q96BD8 AL031963.3-201ENST00000606441 850 ntBASIC19.71■□□□□ 0.75
SKA1Q96BD8 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.71■□□□□ 0.75
SKA1Q96BD8 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA1Q96BD8 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA1Q96BD8 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA1Q96BD8 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA1Q96BD8 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
SKA1Q96BD8 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.71■□□□□ 0.75
SKA1Q96BD8 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SKA1Q96BD8 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SKA1Q96BD8 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.7■□□□□ 0.74
SKA1Q96BD8 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SKA1Q96BD8 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
SKA1Q96BD8 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
SKA1Q96BD8 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SKA1Q96BD8 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SKA1Q96BD8 UNC93B2-201ENST00000285383 730 ntBASIC19.7■□□□□ 0.74
SKA1Q96BD8 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.7■□□□□ 0.74
SKA1Q96BD8 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.7■□□□□ 0.74
SKA1Q96BD8 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.7■□□□□ 0.74
SKA1Q96BD8 AC012306.2-201ENST00000609350 630 ntBASIC19.7■□□□□ 0.74
SKA1Q96BD8 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SKA1Q96BD8 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SKA1Q96BD8 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.7■□□□□ 0.74
SKA1Q96BD8 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SKA1Q96BD8 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
SKA1Q96BD8 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
SKA1Q96BD8 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
SKA1Q96BD8 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA1Q96BD8 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SKA1Q96BD8 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SKA1Q96BD8 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA1Q96BD8 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.69■□□□□ 0.74
SKA1Q96BD8 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.69■□□□□ 0.74
SKA1Q96BD8 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.69■□□□□ 0.74
SKA1Q96BD8 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA1Q96BD8 NUDT16P1-203ENST00000513809 620 ntBASIC19.69■□□□□ 0.74
SKA1Q96BD8 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.69■□□□□ 0.74
SKA1Q96BD8 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.69■□□□□ 0.74
SKA1Q96BD8 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
SKA1Q96BD8 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.69■□□□□ 0.74
SKA1Q96BD8 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.69■□□□□ 0.74
SKA1Q96BD8 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SKA1Q96BD8 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.69■□□□□ 0.74
SKA1Q96BD8 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA1Q96BD8 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA1Q96BD8 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA1Q96BD8 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA1Q96BD8 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.69■□□□□ 0.74
SKA1Q96BD8 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA1Q96BD8 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA1Q96BD8 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SKA1Q96BD8 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.69■□□□□ 0.74
SKA1Q96BD8 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SKA1Q96BD8 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA1Q96BD8 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.68■□□□□ 0.74
SKA1Q96BD8 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA1Q96BD8 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SKA1Q96BD8 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SKA1Q96BD8 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA1Q96BD8 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.68■□□□□ 0.74
SKA1Q96BD8 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SKA1Q96BD8 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA1Q96BD8 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA1Q96BD8 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.68■□□□□ 0.74
SKA1Q96BD8 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.68■□□□□ 0.74
SKA1Q96BD8 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA1Q96BD8 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SKA1Q96BD8 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.68■□□□□ 0.74
SKA1Q96BD8 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
SKA1Q96BD8 BX119927.1-201ENST00000636596 1552 ntBASIC19.68■□□□□ 0.74
SKA1Q96BD8 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA1Q96BD8 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.68■□□□□ 0.74
SKA1Q96BD8 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.68■□□□□ 0.74
SKA1Q96BD8 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SKA1Q96BD8 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA1Q96BD8 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA1Q96BD8 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SKA1Q96BD8 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA1Q96BD8 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SKA1Q96BD8 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA1Q96BD8 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA1Q96BD8 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SKA1Q96BD8 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA1Q96BD8 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA1Q96BD8 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SKA1Q96BD8 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.67■□□□□ 0.74
SKA1Q96BD8 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms