Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 AC006333.2-201ENST00000607957 2099 ntBASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.45■□□□□ 0.54
CLHC1Q8NHS4 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 AC069152.1-201ENST00000438030 544 ntBASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 AC104771.1-201ENST00000603335 964 ntBASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 NEFHP1-201ENST00000412845 2629 ntBASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.44■□□□□ 0.54
CLHC1Q8NHS4 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 CROCCP3-202ENST00000420820 1947 ntBASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 AC008687.6-201ENST00000596318 630 ntBASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLHC1Q8NHS4 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 AC090192.1-201ENST00000517740 490 ntBASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 AC133041.1-202ENST00000642053 222 ntBASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLHC1Q8NHS4 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms