Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 HR-201ENST00000312841 5351 ntTSL 5 BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 MOK-225ENST00000522867 1883 ntTSL 5 BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CLRN3Q8NCR9 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 AC134043.2-201ENST00000624206 2238 ntBASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 PVT1_1.1-201ENST00000615125 194 ntBASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CLRN3Q8NCR9 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC15.33■□□□□ 0.05
CLRN3Q8NCR9 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLRN3Q8NCR9 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLRN3Q8NCR9 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.33■□□□□ 0.05
CLRN3Q8NCR9 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLRN3Q8NCR9 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.33■□□□□ 0.05
CLRN3Q8NCR9 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CLRN3Q8NCR9 AC009237.14-201ENST00000609975 1594 ntBASIC15.33■□□□□ 0.05
CLRN3Q8NCR9 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 MIR2861-201ENST00000636310 90 ntBASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CLRN3Q8NCR9 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms