Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.84■□□□□ 0.45
BEST3Q8N1M1 AC113347.1-201ENST00000413321 391 ntBASIC17.84■□□□□ 0.45
BEST3Q8N1M1 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.84■□□□□ 0.45
BEST3Q8N1M1 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.84■□□□□ 0.45
BEST3Q8N1M1 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.84■□□□□ 0.45
BEST3Q8N1M1 AL160286.2-201ENST00000567150 934 ntBASIC17.84■□□□□ 0.45
BEST3Q8N1M1 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.84■□□□□ 0.45
BEST3Q8N1M1 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.84■□□□□ 0.45
BEST3Q8N1M1 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.84■□□□□ 0.45
BEST3Q8N1M1 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
BEST3Q8N1M1 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
BEST3Q8N1M1 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
BEST3Q8N1M1 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.84■□□□□ 0.45
BEST3Q8N1M1 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
BEST3Q8N1M1 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
BEST3Q8N1M1 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.45
BEST3Q8N1M1 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.83■□□□□ 0.45
BEST3Q8N1M1 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
BEST3Q8N1M1 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
BEST3Q8N1M1 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
BEST3Q8N1M1 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.83■□□□□ 0.44
BEST3Q8N1M1 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.83■□□□□ 0.44
BEST3Q8N1M1 AC091390.4-202ENST00000476426 537 ntBASIC17.83■□□□□ 0.44
BEST3Q8N1M1 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.83■□□□□ 0.44
BEST3Q8N1M1 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.83■□□□□ 0.44
BEST3Q8N1M1 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
BEST3Q8N1M1 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
BEST3Q8N1M1 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.83■□□□□ 0.44
BEST3Q8N1M1 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.83■□□□□ 0.44
BEST3Q8N1M1 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.83■□□□□ 0.44
BEST3Q8N1M1 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 SLC25A3P1-201ENST00000443844 931 ntBASIC17.82■□□□□ 0.44
BEST3Q8N1M1 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 AC092865.7-201ENST00000641832 219 ntBASIC17.82■□□□□ 0.44
BEST3Q8N1M1 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
BEST3Q8N1M1 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 AL137013.1-201ENST00000432946 1228 ntBASIC17.81■□□□□ 0.44
BEST3Q8N1M1 MFAP1P1-201ENST00000442257 1255 ntBASIC17.81■□□□□ 0.44
BEST3Q8N1M1 KRT18P57-201ENST00000443599 1254 ntBASIC17.81■□□□□ 0.44
BEST3Q8N1M1 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
BEST3Q8N1M1 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 TSPY14P-201ENST00000303979 915 ntBASIC17.8■□□□□ 0.44
BEST3Q8N1M1 TERF1P1-201ENST00000311003 1181 ntBASIC17.8■□□□□ 0.44
BEST3Q8N1M1 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 EGLN1P1-201ENST00000531623 762 ntBASIC17.8■□□□□ 0.44
BEST3Q8N1M1 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.8■□□□□ 0.44
BEST3Q8N1M1 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms