Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
USP48Q86UV5 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
USP48Q86UV5 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC23.55■■□□□ 1.36
USP48Q86UV5 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
USP48Q86UV5 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC23.55■■□□□ 1.36
USP48Q86UV5 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
USP48Q86UV5 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC23.55■■□□□ 1.36
USP48Q86UV5 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC23.55■■□□□ 1.36
USP48Q86UV5 FAM86EP-206ENST00000510506 987 ntBASIC23.55■■□□□ 1.36
USP48Q86UV5 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC23.55■■□□□ 1.36
USP48Q86UV5 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC23.55■■□□□ 1.36
USP48Q86UV5 AC093458.2-201ENST00000623150 629 ntBASIC23.55■■□□□ 1.36
USP48Q86UV5 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC23.55■■□□□ 1.36
USP48Q86UV5 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC23.55■■□□□ 1.36
USP48Q86UV5 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
USP48Q86UV5 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
USP48Q86UV5 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC23.55■■□□□ 1.36
USP48Q86UV5 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC23.55■■□□□ 1.36
USP48Q86UV5 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
USP48Q86UV5 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
USP48Q86UV5 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
USP48Q86UV5 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
USP48Q86UV5 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
USP48Q86UV5 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
USP48Q86UV5 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
USP48Q86UV5 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC23.54■■□□□ 1.36
USP48Q86UV5 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC23.54■■□□□ 1.36
USP48Q86UV5 COX11P1-201ENST00000489116 835 ntBASIC23.54■■□□□ 1.36
USP48Q86UV5 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
USP48Q86UV5 CYGB-204ENST00000589342 815 ntTSL 3 BASIC23.54■■□□□ 1.36
USP48Q86UV5 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC23.54■■□□□ 1.36
USP48Q86UV5 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC23.54■■□□□ 1.36
USP48Q86UV5 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
USP48Q86UV5 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
USP48Q86UV5 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
USP48Q86UV5 SMG8-203ENST00000578922 2178 ntBASIC23.54■■□□□ 1.36
USP48Q86UV5 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
USP48Q86UV5 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP48Q86UV5 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
USP48Q86UV5 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP48Q86UV5 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
USP48Q86UV5 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP48Q86UV5 FAM207BP-201ENST00000447172 505 ntBASIC23.53■■□□□ 1.36
USP48Q86UV5 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
USP48Q86UV5 AP000692.2-201ENST00000608391 879 ntBASIC23.53■■□□□ 1.36
USP48Q86UV5 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC23.53■■□□□ 1.36
USP48Q86UV5 AC011558.1-201ENST00000623459 338 ntBASIC23.53■■□□□ 1.36
USP48Q86UV5 VPS72-207ENST00000640458 689 ntTSL 5 BASIC23.53■■□□□ 1.36
USP48Q86UV5 AC116562.4-202ENST00000641738 218 ntBASIC23.53■■□□□ 1.36
USP48Q86UV5 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP48Q86UV5 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC23.53■■□□□ 1.36
USP48Q86UV5 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
USP48Q86UV5 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC23.53■■□□□ 1.36
USP48Q86UV5 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP48Q86UV5 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP48Q86UV5 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP48Q86UV5 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP48Q86UV5 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP48Q86UV5 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP48Q86UV5 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP48Q86UV5 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
USP48Q86UV5 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
USP48Q86UV5 AL450487.1-201ENST00000426799 995 ntBASIC23.52■■□□□ 1.36
USP48Q86UV5 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC23.52■■□□□ 1.36
USP48Q86UV5 AC008040.2-201ENST00000461049 708 ntBASIC23.52■■□□□ 1.36
USP48Q86UV5 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
USP48Q86UV5 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC23.52■■□□□ 1.36
USP48Q86UV5 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC23.52■■□□□ 1.36
USP48Q86UV5 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP48Q86UV5 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP48Q86UV5 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC23.52■■□□□ 1.36
USP48Q86UV5 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP48Q86UV5 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP48Q86UV5 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP48Q86UV5 AC116562.4-201ENST00000641316 2276 ntBASIC23.52■■□□□ 1.36
USP48Q86UV5 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
USP48Q86UV5 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC23.52■■□□□ 1.35
USP48Q86UV5 STK25-204ENST00000405585 1643 ntTSL 2 BASIC23.51■■□□□ 1.35
USP48Q86UV5 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP48Q86UV5 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
USP48Q86UV5 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP48Q86UV5 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC23.51■■□□□ 1.35
USP48Q86UV5 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC23.51■■□□□ 1.35
USP48Q86UV5 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC23.51■■□□□ 1.35
USP48Q86UV5 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC23.51■■□□□ 1.35
USP48Q86UV5 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
USP48Q86UV5 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC23.51■■□□□ 1.35
USP48Q86UV5 GPX4-207ENST00000589115 812 ntTSL 2 BASIC23.51■■□□□ 1.35
USP48Q86UV5 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC23.51■■□□□ 1.35
USP48Q86UV5 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
USP48Q86UV5 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
USP48Q86UV5 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP48Q86UV5 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC23.51■■□□□ 1.35
USP48Q86UV5 IER3-202ENST00000376377 1350 ntBASIC23.51■■□□□ 1.35
USP48Q86UV5 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
USP48Q86UV5 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
USP48Q86UV5 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
USP48Q86UV5 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC23.5■■□□□ 1.35
USP48Q86UV5 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP48Q86UV5 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms