Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 AC112907.2-201ENST00000448639 330 ntBASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 AC104692.2-201ENST00000603054 253 ntBASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 AC117500.6-201ENST00000624871 588 ntBASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 AC004870.1-201ENST00000315132 882 ntBASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 AP003041.3-201ENST00000527151 707 ntBASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 AC092119.3-201ENST00000612618 583 ntBASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 PHGDH-210ENST00000641115 1638 ntBASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CSPG4Q6UVK1 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 FEM1AP1-201ENST00000431297 1995 ntBASIC15.84■□□□□ 0.13
CSPG4Q6UVK1 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
CSPG4Q6UVK1 KRT8P8-201ENST00000434750 1448 ntBASIC15.83■□□□□ 0.13
CSPG4Q6UVK1 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC15.83■□□□□ 0.13
CSPG4Q6UVK1 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC15.83■□□□□ 0.13
CSPG4Q6UVK1 GLRB-205ENST00000512619 728 ntTSL 3 BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 AL121672.3-201ENST00000608644 468 ntBASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC15.83■□□□□ 0.12
CSPG4Q6UVK1 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms