Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC16.54■□□□□ 0.24
ABCA4P78363 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.54■□□□□ 0.24
ABCA4P78363 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC16.54■□□□□ 0.24
ABCA4P78363 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.54■□□□□ 0.24
ABCA4P78363 PRSS44-201ENST00000515154 1146 ntBASIC16.54■□□□□ 0.24
ABCA4P78363 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
ABCA4P78363 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.54■□□□□ 0.24
ABCA4P78363 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.54■□□□□ 0.24
ABCA4P78363 AL031432.5-201ENST00000641059 760 ntBASIC16.54■□□□□ 0.24
ABCA4P78363 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC16.54■□□□□ 0.24
ABCA4P78363 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.54■□□□□ 0.24
ABCA4P78363 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC16.54■□□□□ 0.24
ABCA4P78363 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ABCA4P78363 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ABCA4P78363 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ABCA4P78363 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
ABCA4P78363 NEK4P2-201ENST00000580004 1012 ntBASIC16.53■□□□□ 0.24
ABCA4P78363 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ABCA4P78363 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
ABCA4P78363 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ABCA4P78363 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
ABCA4P78363 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
ABCA4P78363 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC16.53■□□□□ 0.24
ABCA4P78363 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ABCA4P78363 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ABCA4P78363 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ABCA4P78363 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ABCA4P78363 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ABCA4P78363 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.53■□□□□ 0.24
ABCA4P78363 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.53■□□□□ 0.24
ABCA4P78363 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ABCA4P78363 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
ABCA4P78363 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ABCA4P78363 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ABCA4P78363 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ABCA4P78363 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ABCA4P78363 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
ABCA4P78363 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ABCA4P78363 STARP1-201ENST00000397973 869 ntBASIC16.52■□□□□ 0.24
ABCA4P78363 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ABCA4P78363 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.52■□□□□ 0.24
ABCA4P78363 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.52■□□□□ 0.24
ABCA4P78363 NME1-207ENST00000480143 964 ntTSL 2 BASIC16.52■□□□□ 0.24
ABCA4P78363 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.52■□□□□ 0.24
ABCA4P78363 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
ABCA4P78363 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.52■□□□□ 0.24
ABCA4P78363 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ABCA4P78363 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC16.52■□□□□ 0.23
ABCA4P78363 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.52■□□□□ 0.23
ABCA4P78363 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
ABCA4P78363 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ABCA4P78363 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ABCA4P78363 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.23
ABCA4P78363 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC16.52■□□□□ 0.23
ABCA4P78363 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
ABCA4P78363 AL671277.2-201ENST00000458060 996 ntBASIC16.52■□□□□ 0.23
ABCA4P78363 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
ABCA4P78363 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
ABCA4P78363 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC16.52■□□□□ 0.23
ABCA4P78363 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
ABCA4P78363 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.52■□□□□ 0.23
ABCA4P78363 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ABCA4P78363 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.52■□□□□ 0.23
ABCA4P78363 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.51■□□□□ 0.23
ABCA4P78363 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ABCA4P78363 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ABCA4P78363 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
ABCA4P78363 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ABCA4P78363 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.51■□□□□ 0.23
ABCA4P78363 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ABCA4P78363 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
ABCA4P78363 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ABCA4P78363 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ABCA4P78363 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ABCA4P78363 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ABCA4P78363 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.51■□□□□ 0.23
ABCA4P78363 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.51■□□□□ 0.23
ABCA4P78363 AL136038.3-201ENST00000561909 1096 ntBASIC16.51■□□□□ 0.23
ABCA4P78363 AC111152.3-201ENST00000569699 673 ntBASIC16.51■□□□□ 0.23
ABCA4P78363 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.51■□□□□ 0.23
ABCA4P78363 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.51■□□□□ 0.23
ABCA4P78363 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ABCA4P78363 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
ABCA4P78363 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ABCA4P78363 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ABCA4P78363 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ABCA4P78363 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
ABCA4P78363 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
ABCA4P78363 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ABCA4P78363 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16.51■□□□□ 0.23
ABCA4P78363 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
ABCA4P78363 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.5■□□□□ 0.23
ABCA4P78363 MIR3180-1-201ENST00000580374 94 ntBASIC16.5■□□□□ 0.23
ABCA4P78363 MIR3180-3-201ENST00000584616 94 ntBASIC16.5■□□□□ 0.23
ABCA4P78363 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ABCA4P78363 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.5■□□□□ 0.23
ABCA4P78363 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms