Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
FOXA1P55317 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
FOXA1P55317 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.63■□□□□ 0.57
FOXA1P55317 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
FOXA1P55317 AL031598.1-201ENST00000561511 1773 ntBASIC18.63■□□□□ 0.57
FOXA1P55317 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA1P55317 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA1P55317 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA1P55317 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.62■□□□□ 0.57
FOXA1P55317 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA1P55317 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA1P55317 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.62■□□□□ 0.57
FOXA1P55317 TUBB8P6-201ENST00000436895 1288 ntBASIC18.62■□□□□ 0.57
FOXA1P55317 AC069152.1-201ENST00000438030 544 ntBASIC18.62■□□□□ 0.57
FOXA1P55317 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.62■□□□□ 0.57
FOXA1P55317 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.62■□□□□ 0.57
FOXA1P55317 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.62■□□□□ 0.57
FOXA1P55317 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.62■□□□□ 0.57
FOXA1P55317 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
FOXA1P55317 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA1P55317 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.62■□□□□ 0.57
FOXA1P55317 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
FOXA1P55317 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA1P55317 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA1P55317 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.62■□□□□ 0.57
FOXA1P55317 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA1P55317 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA1P55317 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA1P55317 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA1P55317 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
FOXA1P55317 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.62■□□□□ 0.57
FOXA1P55317 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
FOXA1P55317 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA1P55317 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA1P55317 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.62■□□□□ 0.57
FOXA1P55317 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA1P55317 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
FOXA1P55317 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.61■□□□□ 0.57
FOXA1P55317 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA1P55317 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.61■□□□□ 0.57
FOXA1P55317 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA1P55317 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.61■□□□□ 0.57
FOXA1P55317 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.61■□□□□ 0.57
FOXA1P55317 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA1P55317 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA1P55317 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA1P55317 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
FOXA1P55317 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.61■□□□□ 0.57
FOXA1P55317 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
FOXA1P55317 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
FOXA1P55317 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.61■□□□□ 0.57
FOXA1P55317 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.61■□□□□ 0.57
FOXA1P55317 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA1P55317 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.61■□□□□ 0.57
FOXA1P55317 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.61■□□□□ 0.57
FOXA1P55317 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.61■□□□□ 0.57
FOXA1P55317 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.61■□□□□ 0.57
FOXA1P55317 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
FOXA1P55317 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.61■□□□□ 0.57
FOXA1P55317 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA1P55317 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA1P55317 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA1P55317 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA1P55317 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.61■□□□□ 0.57
FOXA1P55317 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
FOXA1P55317 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA1P55317 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.61■□□□□ 0.57
FOXA1P55317 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA1P55317 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
FOXA1P55317 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA1P55317 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA1P55317 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA1P55317 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.6■□□□□ 0.57
FOXA1P55317 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA1P55317 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.6■□□□□ 0.57
FOXA1P55317 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
FOXA1P55317 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA1P55317 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
FOXA1P55317 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
FOXA1P55317 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA1P55317 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA1P55317 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA1P55317 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA1P55317 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.57
FOXA1P55317 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.6■□□□□ 0.57
FOXA1P55317 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
FOXA1P55317 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA1P55317 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
FOXA1P55317 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
FOXA1P55317 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
FOXA1P55317 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA1P55317 WIZP1-201ENST00000531444 2299 ntBASIC18.6■□□□□ 0.57
FOXA1P55317 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
FOXA1P55317 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.59■□□□□ 0.57
FOXA1P55317 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA1P55317 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms