Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.63■□□□□ 0.89
COL4A4P53420 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
COL4A4P53420 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.63■□□□□ 0.89
COL4A4P53420 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A4P53420 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.63■□□□□ 0.89
COL4A4P53420 AC004870.1-201ENST00000315132 882 ntBASIC20.63■□□□□ 0.89
COL4A4P53420 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.63■□□□□ 0.89
COL4A4P53420 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.63■□□□□ 0.89
COL4A4P53420 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.63■□□□□ 0.89
COL4A4P53420 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A4P53420 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A4P53420 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
COL4A4P53420 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A4P53420 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A4P53420 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.62■□□□□ 0.89
COL4A4P53420 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A4P53420 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A4P53420 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.62■□□□□ 0.89
COL4A4P53420 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A4P53420 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.62■□□□□ 0.89
COL4A4P53420 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.62■□□□□ 0.89
COL4A4P53420 MIR3652-201ENST00000579335 131 ntBASIC20.62■□□□□ 0.89
COL4A4P53420 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.62■□□□□ 0.89
COL4A4P53420 AC092119.3-201ENST00000612618 583 ntBASIC20.62■□□□□ 0.89
COL4A4P53420 CR769767.2-201ENST00000622735 460 ntBASIC20.62■□□□□ 0.89
COL4A4P53420 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
COL4A4P53420 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A4P53420 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A4P53420 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.62■□□□□ 0.89
COL4A4P53420 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A4P53420 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A4P53420 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A4P53420 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A4P53420 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.61■□□□□ 0.89
COL4A4P53420 KRT17P6-201ENST00000453795 1220 ntBASIC20.61■□□□□ 0.89
COL4A4P53420 AL031008.1-201ENST00000619963 541 ntBASIC20.61■□□□□ 0.89
COL4A4P53420 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A4P53420 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A4P53420 AC009237.14-201ENST00000609975 1594 ntBASIC20.61■□□□□ 0.89
COL4A4P53420 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A4P53420 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A4P53420 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.61■□□□□ 0.89
COL4A4P53420 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.61■□□□□ 0.89
COL4A4P53420 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A4P53420 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.61■□□□□ 0.89
COL4A4P53420 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A4P53420 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.61■□□□□ 0.89
COL4A4P53420 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.61■□□□□ 0.89
COL4A4P53420 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A4P53420 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.61■□□□□ 0.89
COL4A4P53420 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
COL4A4P53420 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.61■□□□□ 0.89
COL4A4P53420 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.61■□□□□ 0.89
COL4A4P53420 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.6■□□□□ 0.89
COL4A4P53420 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A4P53420 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
COL4A4P53420 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A4P53420 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A4P53420 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
COL4A4P53420 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
COL4A4P53420 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A4P53420 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.6■□□□□ 0.89
COL4A4P53420 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
COL4A4P53420 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC20.6■□□□□ 0.89
COL4A4P53420 CKBP1-201ENST00000565489 1086 ntBASIC20.6■□□□□ 0.89
COL4A4P53420 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A4P53420 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.6■□□□□ 0.89
COL4A4P53420 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL4A4P53420 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.6■□□□□ 0.89
COL4A4P53420 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.59■□□□□ 0.89
COL4A4P53420 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A4P53420 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
COL4A4P53420 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
COL4A4P53420 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.59■□□□□ 0.89
COL4A4P53420 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
COL4A4P53420 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A4P53420 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.59■□□□□ 0.89
COL4A4P53420 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A4P53420 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A4P53420 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.59■□□□□ 0.89
COL4A4P53420 GCSHP2-201ENST00000560971 527 ntBASIC20.59■□□□□ 0.89
COL4A4P53420 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.59■□□□□ 0.89
COL4A4P53420 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.59■□□□□ 0.89
COL4A4P53420 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A4P53420 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL4A4P53420 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.59■□□□□ 0.89
COL4A4P53420 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.59■□□□□ 0.89
COL4A4P53420 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
COL4A4P53420 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A4P53420 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A4P53420 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A4P53420 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC20.58■□□□□ 0.89
COL4A4P53420 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A4P53420 AL022342.1-201ENST00000400363 863 ntBASIC20.58■□□□□ 0.89
COL4A4P53420 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.58■□□□□ 0.89
COL4A4P53420 MIR3180-1-201ENST00000580374 94 ntBASIC20.58■□□□□ 0.89
COL4A4P53420 MIR3180-3-201ENST00000584616 94 ntBASIC20.58■□□□□ 0.89
COL4A4P53420 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.58■□□□□ 0.89
COL4A4P53420 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.58■□□□□ 0.89
COL4A4P53420 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms