Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLCN3P51790 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLCN3P51790 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLCN3P51790 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLCN3P51790 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLCN3P51790 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.16■□□□□ 0.98
CLCN3P51790 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.16■□□□□ 0.98
CLCN3P51790 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC21.15■□□□□ 0.98
CLCN3P51790 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CLCN3P51790 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CLCN3P51790 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21.15■□□□□ 0.98
CLCN3P51790 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21.15■□□□□ 0.98
CLCN3P51790 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC21.15■□□□□ 0.98
CLCN3P51790 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC21.15■□□□□ 0.98
CLCN3P51790 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 TREX1-205ENST00000625293 1783 ntBASIC21.15■□□□□ 0.98
CLCN3P51790 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
CLCN3P51790 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCN3P51790 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.15■□□□□ 0.98
CLCN3P51790 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC21.15■□□□□ 0.98
CLCN3P51790 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLCN3P51790 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CLCN3P51790 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLCN3P51790 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.14■□□□□ 0.98
CLCN3P51790 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLCN3P51790 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLCN3P51790 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLCN3P51790 ARMC10P1-201ENST00000313754 855 ntBASIC21.14■□□□□ 0.97
CLCN3P51790 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLCN3P51790 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.14■□□□□ 0.97
CLCN3P51790 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CLCN3P51790 AP003041.3-201ENST00000527151 707 ntBASIC21.14■□□□□ 0.97
CLCN3P51790 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.14■□□□□ 0.97
CLCN3P51790 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.14■□□□□ 0.97
CLCN3P51790 AL138966.2-201ENST00000621997 464 ntBASIC21.14■□□□□ 0.97
CLCN3P51790 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLCN3P51790 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLCN3P51790 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLCN3P51790 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CLCN3P51790 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CLCN3P51790 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLCN3P51790 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLCN3P51790 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.13■□□□□ 0.97
CLCN3P51790 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLCN3P51790 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLCN3P51790 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CLCN3P51790 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLCN3P51790 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CLCN3P51790 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CLCN3P51790 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.13■□□□□ 0.97
CLCN3P51790 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.13■□□□□ 0.97
CLCN3P51790 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLCN3P51790 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
CLCN3P51790 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLCN3P51790 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLCN3P51790 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLCN3P51790 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.13■□□□□ 0.97
CLCN3P51790 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC21.13■□□□□ 0.97
CLCN3P51790 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC21.13■□□□□ 0.97
CLCN3P51790 TSPY23P-201ENST00000440136 739 ntBASIC21.13■□□□□ 0.97
CLCN3P51790 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.13■□□□□ 0.97
CLCN3P51790 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC21.13■□□□□ 0.97
CLCN3P51790 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLCN3P51790 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
CLCN3P51790 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.13■□□□□ 0.97
CLCN3P51790 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.13■□□□□ 0.97
CLCN3P51790 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLCN3P51790 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLCN3P51790 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLCN3P51790 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CLCN3P51790 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLCN3P51790 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLCN3P51790 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLCN3P51790 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLCN3P51790 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC21.12■□□□□ 0.97
CLCN3P51790 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.12■□□□□ 0.97
CLCN3P51790 AC117947.1-201ENST00000427448 529 ntBASIC21.12■□□□□ 0.97
CLCN3P51790 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.12■□□□□ 0.97
CLCN3P51790 BX664615.1-201ENST00000443558 458 ntBASIC21.12■□□□□ 0.97
CLCN3P51790 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CLCN3P51790 WWOX-216ENST00000569818 525 ntBASIC21.12■□□□□ 0.97
CLCN3P51790 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.12■□□□□ 0.97
CLCN3P51790 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLCN3P51790 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CLCN3P51790 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms