Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX2P48431 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.93■□□□□ 0.3
SOX2P48431 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX2P48431 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.93■□□□□ 0.3
SOX2P48431 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC16.93■□□□□ 0.3
SOX2P48431 ZNF815P-204ENST00000434898 1737 ntBASIC16.93■□□□□ 0.3
SOX2P48431 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SOX2P48431 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX2P48431 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SOX2P48431 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
SOX2P48431 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX2P48431 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX2P48431 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX2P48431 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
SOX2P48431 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
SOX2P48431 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX2P48431 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX2P48431 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX2P48431 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC16.92■□□□□ 0.3
SOX2P48431 LSM12P1-201ENST00000411836 588 ntBASIC16.92■□□□□ 0.3
SOX2P48431 AC006015.1-201ENST00000429970 570 ntBASIC16.92■□□□□ 0.3
SOX2P48431 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX2P48431 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX2P48431 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX2P48431 MAZ-216ENST00000616501 991 ntTSL 5 BASIC16.92■□□□□ 0.3
SOX2P48431 PARP1-210ENST00000629232 477 ntTSL 5 BASIC16.92■□□□□ 0.3
SOX2P48431 AC018470.1-201ENST00000624790 3129 ntBASIC16.92■□□□□ 0.3
SOX2P48431 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.92■□□□□ 0.3
SOX2P48431 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
SOX2P48431 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX2P48431 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC16.92■□□□□ 0.3
SOX2P48431 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX2P48431 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX2P48431 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
SOX2P48431 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX2P48431 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC16.92■□□□□ 0.3
SOX2P48431 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC16.92■□□□□ 0.3
SOX2P48431 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX2P48431 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SOX2P48431 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX2P48431 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
SOX2P48431 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
SOX2P48431 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX2P48431 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SOX2P48431 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX2P48431 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX2P48431 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX2P48431 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SOX2P48431 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX2P48431 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX2P48431 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC16.91■□□□□ 0.3
SOX2P48431 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX2P48431 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX2P48431 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SOX2P48431 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX2P48431 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC16.91■□□□□ 0.3
SOX2P48431 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX2P48431 ISCU-212ENST00000547005 795 ntTSL 3 BASIC16.91■□□□□ 0.3
SOX2P48431 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC16.91■□□□□ 0.3
SOX2P48431 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX2P48431 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC16.91■□□□□ 0.3
SOX2P48431 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
SOX2P48431 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SOX2P48431 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SOX2P48431 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
SOX2P48431 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX2P48431 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SOX2P48431 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.91■□□□□ 0.3
SOX2P48431 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX2P48431 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX2P48431 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SOX2P48431 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX2P48431 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.9■□□□□ 0.3
SOX2P48431 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SOX2P48431 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX2P48431 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX2P48431 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.9■□□□□ 0.3
SOX2P48431 AC005082.1-201ENST00000413042 2259 ntBASIC16.9■□□□□ 0.3
SOX2P48431 TFP1-202ENST00000475455 1573 ntBASIC16.9■□□□□ 0.3
SOX2P48431 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX2P48431 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SOX2P48431 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX2P48431 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX2P48431 GPX1P1-201ENST00000388829 606 ntBASIC16.9■□□□□ 0.3
SOX2P48431 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX2P48431 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC16.9■□□□□ 0.3
SOX2P48431 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC16.9■□□□□ 0.3
SOX2P48431 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SOX2P48431 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC16.9■□□□□ 0.3
SOX2P48431 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX2P48431 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC16.9■□□□□ 0.3
SOX2P48431 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX2P48431 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.9■□□□□ 0.3
SOX2P48431 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
SOX2P48431 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX2P48431 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
SOX2P48431 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX2P48431 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX2P48431 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC16.89■□□□□ 0.3
SOX2P48431 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms