Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CDX1P47902 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC15.65■□□□□ 0.1
CDX1P47902 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDX1P47902 PRORSD1P-201ENST00000295112 541 ntBASIC15.65■□□□□ 0.1
CDX1P47902 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC15.65■□□□□ 0.1
CDX1P47902 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC15.65■□□□□ 0.1
CDX1P47902 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC15.65■□□□□ 0.1
CDX1P47902 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC15.65■□□□□ 0.1
CDX1P47902 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC15.65■□□□□ 0.1
CDX1P47902 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC15.65■□□□□ 0.1
CDX1P47902 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDX1P47902 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDX1P47902 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDX1P47902 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CDX1P47902 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC15.65■□□□□ 0.1
CDX1P47902 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDX1P47902 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC15.65■□□□□ 0.1
CDX1P47902 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC15.64■□□□□ 0.1
CDX1P47902 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CDX1P47902 MOK-233ENST00000524214 1539 ntTSL 2 BASIC15.64■□□□□ 0.09
CDX1P47902 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC15.64■□□□□ 0.09
CDX1P47902 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CDX1P47902 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CDX1P47902 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CDX1P47902 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC15.64■□□□□ 0.09
CDX1P47902 ABHD17AP6-201ENST00000458502 1044 ntBASIC15.64■□□□□ 0.09
CDX1P47902 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 AC023632.3-201ENST00000521633 145 ntBASIC15.64■□□□□ 0.09
CDX1P47902 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC15.64■□□□□ 0.09
CDX1P47902 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC15.64■□□□□ 0.09
CDX1P47902 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC15.64■□□□□ 0.09
CDX1P47902 PRORSD1P-202ENST00000563365 2154 ntBASIC15.64■□□□□ 0.09
CDX1P47902 AC008687.6-201ENST00000596318 630 ntBASIC15.64■□□□□ 0.09
CDX1P47902 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC15.64■□□□□ 0.09
CDX1P47902 MMD2-204ENST00000612910 778 ntTSL 5 BASIC15.64■□□□□ 0.09
CDX1P47902 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CDX1P47902 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC15.64■□□□□ 0.09
CDX1P47902 AC073648.6-201ENST00000641589 218 ntBASIC15.64■□□□□ 0.09
CDX1P47902 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC15.64■□□□□ 0.09
CDX1P47902 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CDX1P47902 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
CDX1P47902 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CDX1P47902 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CDX1P47902 AC012313.1-201ENST00000593393 3059 ntBASIC15.64■□□□□ 0.09
CDX1P47902 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC15.64■□□□□ 0.09
CDX1P47902 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CDX1P47902 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC15.63■□□□□ 0.09
CDX1P47902 AC139713.2-201ENST00000641328 2723 ntBASIC15.63■□□□□ 0.09
CDX1P47902 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC15.63■□□□□ 0.09
CDX1P47902 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 RER1-204ENST00000378518 522 ntTSL 3 BASIC15.63■□□□□ 0.09
CDX1P47902 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC15.63■□□□□ 0.09
CDX1P47902 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC15.63■□□□□ 0.09
CDX1P47902 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
CDX1P47902 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC15.63■□□□□ 0.09
CDX1P47902 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC15.63■□□□□ 0.09
CDX1P47902 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.63■□□□□ 0.09
CDX1P47902 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC15.63■□□□□ 0.09
CDX1P47902 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC15.63■□□□□ 0.09
CDX1P47902 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
CDX1P47902 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC15.63■□□□□ 0.09
CDX1P47902 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
CDX1P47902 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
CDX1P47902 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms