Protein–RNA interactions for Protein: P31270

HOXA11, Homeobox protein Hox-A11, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA11P31270 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
HOXA11P31270 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
HOXA11P31270 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
HOXA11P31270 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.83■□□□□ 0.93
HOXA11P31270 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.83■□□□□ 0.93
HOXA11P31270 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HOXA11P31270 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
HOXA11P31270 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.83■□□□□ 0.93
HOXA11P31270 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.83■□□□□ 0.93
HOXA11P31270 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.83■□□□□ 0.93
HOXA11P31270 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.83■□□□□ 0.93
HOXA11P31270 AC139887.4-201ENST00000607877 719 ntBASIC20.83■□□□□ 0.93
HOXA11P31270 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.83■□□□□ 0.93
HOXA11P31270 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.83■□□□□ 0.93
HOXA11P31270 AC141257.4-201ENST00000634557 245 ntBASIC20.83■□□□□ 0.93
HOXA11P31270 AC136944.6-201ENST00000634818 245 ntBASIC20.83■□□□□ 0.93
HOXA11P31270 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXA11P31270 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HOXA11P31270 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
HOXA11P31270 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.83■□□□□ 0.92
HOXA11P31270 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXA11P31270 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.83■□□□□ 0.92
HOXA11P31270 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.83■□□□□ 0.92
HOXA11P31270 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.83■□□□□ 0.92
HOXA11P31270 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.83■□□□□ 0.92
HOXA11P31270 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXA11P31270 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.83■□□□□ 0.92
HOXA11P31270 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXA11P31270 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA11P31270 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA11P31270 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA11P31270 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA11P31270 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA11P31270 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA11P31270 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA11P31270 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
HOXA11P31270 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
HOXA11P31270 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.82■□□□□ 0.92
HOXA11P31270 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA11P31270 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXA11P31270 AK4P3-201ENST00000418260 669 ntBASIC20.82■□□□□ 0.92
HOXA11P31270 TSPY21P-201ENST00000433481 731 ntBASIC20.82■□□□□ 0.92
HOXA11P31270 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.82■□□□□ 0.92
HOXA11P31270 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
HOXA11P31270 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.82■□□□□ 0.92
HOXA11P31270 NTF6B-201ENST00000591913 560 ntBASIC20.82■□□□□ 0.92
HOXA11P31270 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXA11P31270 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
HOXA11P31270 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
HOXA11P31270 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.82■□□□□ 0.92
HOXA11P31270 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXA11P31270 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
HOXA11P31270 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXA11P31270 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXA11P31270 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXA11P31270 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXA11P31270 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXA11P31270 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXA11P31270 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
HOXA11P31270 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXA11P31270 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXA11P31270 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.81■□□□□ 0.92
HOXA11P31270 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.81■□□□□ 0.92
HOXA11P31270 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXA11P31270 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.81■□□□□ 0.92
HOXA11P31270 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXA11P31270 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
HOXA11P31270 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HOXA11P31270 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
HOXA11P31270 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA11P31270 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXA11P31270 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA11P31270 KRT8P45-201ENST00000414328 1447 ntBASIC20.8■□□□□ 0.92
HOXA11P31270 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA11P31270 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
HOXA11P31270 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA11P31270 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA11P31270 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
HOXA11P31270 YBX1P2-201ENST00000489612 999 ntBASIC20.8■□□□□ 0.92
HOXA11P31270 AC063952.2-201ENST00000498792 1227 ntBASIC20.8■□□□□ 0.92
HOXA11P31270 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA11P31270 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.8■□□□□ 0.92
HOXA11P31270 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
HOXA11P31270 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.8■□□□□ 0.92
HOXA11P31270 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA11P31270 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.8■□□□□ 0.92
HOXA11P31270 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.8■□□□□ 0.92
HOXA11P31270 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA11P31270 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA11P31270 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.8■□□□□ 0.92
HOXA11P31270 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXA11P31270 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXA11P31270 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
HOXA11P31270 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXA11P31270 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXA11P31270 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXA11P31270 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXA11P31270 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXA11P31270 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXA11P31270 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms