Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC16.9■□□□□ 0.3
LMX1BO60663 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1BO60663 MDFI-202ENST00000373050 809 ntTSL 2 BASIC16.9■□□□□ 0.3
LMX1BO60663 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC16.9■□□□□ 0.3
LMX1BO60663 AC006557.6-201ENST00000623071 864 ntBASIC16.9■□□□□ 0.3
LMX1BO60663 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1BO60663 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
LMX1BO60663 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1BO60663 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LMX1BO60663 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1BO60663 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1BO60663 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1BO60663 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
LMX1BO60663 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
LMX1BO60663 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
LMX1BO60663 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC16.89■□□□□ 0.3
LMX1BO60663 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
LMX1BO60663 NEFHP1-201ENST00000412845 2629 ntBASIC16.89■□□□□ 0.29
LMX1BO60663 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
LMX1BO60663 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC16.89■□□□□ 0.29
LMX1BO60663 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1BO60663 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1BO60663 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1BO60663 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.89■□□□□ 0.29
LMX1BO60663 AC012618.2-201ENST00000428058 849 ntBASIC16.89■□□□□ 0.29
LMX1BO60663 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1BO60663 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.89■□□□□ 0.29
LMX1BO60663 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC16.89■□□□□ 0.29
LMX1BO60663 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC16.89■□□□□ 0.29
LMX1BO60663 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
LMX1BO60663 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC16.89■□□□□ 0.29
LMX1BO60663 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1BO60663 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1BO60663 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1BO60663 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
LMX1BO60663 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1BO60663 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1BO60663 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.89■□□□□ 0.29
LMX1BO60663 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1BO60663 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1BO60663 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
LMX1BO60663 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1BO60663 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.89■□□□□ 0.29
LMX1BO60663 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
LMX1BO60663 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
LMX1BO60663 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LMX1BO60663 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1BO60663 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
LMX1BO60663 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1BO60663 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC16.88■□□□□ 0.29
LMX1BO60663 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LMX1BO60663 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1BO60663 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1BO60663 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1BO60663 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1BO60663 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LMX1BO60663 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LMX1BO60663 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1BO60663 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1BO60663 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1BO60663 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.88■□□□□ 0.29
LMX1BO60663 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.88■□□□□ 0.29
LMX1BO60663 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1BO60663 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC16.88■□□□□ 0.29
LMX1BO60663 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC16.88■□□□□ 0.29
LMX1BO60663 AP001412.1-201ENST00000608405 714 ntBASIC16.88■□□□□ 0.29
LMX1BO60663 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1BO60663 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC16.88■□□□□ 0.29
LMX1BO60663 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC16.88■□□□□ 0.29
LMX1BO60663 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.88■□□□□ 0.29
LMX1BO60663 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LMX1BO60663 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LMX1BO60663 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC16.88■□□□□ 0.29
LMX1BO60663 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
LMX1BO60663 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.87■□□□□ 0.29
LMX1BO60663 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1BO60663 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1BO60663 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1BO60663 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1BO60663 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1BO60663 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.87■□□□□ 0.29
LMX1BO60663 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1BO60663 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1BO60663 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
LMX1BO60663 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1BO60663 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1BO60663 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LMX1BO60663 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1BO60663 AC005829.2-201ENST00000571422 1056 ntBASIC16.87■□□□□ 0.29
LMX1BO60663 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC16.87■□□□□ 0.29
LMX1BO60663 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC16.87■□□□□ 0.29
LMX1BO60663 AC233702.5-201ENST00000584107 538 ntBASIC16.87■□□□□ 0.29
LMX1BO60663 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
LMX1BO60663 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1BO60663 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1BO60663 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.87■□□□□ 0.29
LMX1BO60663 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1BO60663 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1BO60663 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LMX1BO60663 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms