Protein–RNA interactions for Protein: O43868

SLC28A2, Sodium/nucleoside cotransporter 2, humanhuman

Predictions only

Length 658 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A2O43868 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SLC28A2O43868 LIN28AP1-201ENST00000429574 405 ntBASIC18.51■□□□□ 0.55
SLC28A2O43868 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SLC28A2O43868 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.51■□□□□ 0.55
SLC28A2O43868 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.51■□□□□ 0.55
SLC28A2O43868 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.51■□□□□ 0.55
SLC28A2O43868 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.51■□□□□ 0.55
SLC28A2O43868 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SLC28A2O43868 AL358472.4-201ENST00000633140 710 ntBASIC18.51■□□□□ 0.55
SLC28A2O43868 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.51■□□□□ 0.55
SLC28A2O43868 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SLC28A2O43868 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SLC28A2O43868 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
SLC28A2O43868 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.51■□□□□ 0.55
SLC28A2O43868 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SLC28A2O43868 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SLC28A2O43868 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SLC28A2O43868 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SLC28A2O43868 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SLC28A2O43868 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SLC28A2O43868 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SLC28A2O43868 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.5■□□□□ 0.55
SLC28A2O43868 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SLC28A2O43868 ATP5G1P1-201ENST00000448724 379 ntBASIC18.5■□□□□ 0.55
SLC28A2O43868 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SLC28A2O43868 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.5■□□□□ 0.55
SLC28A2O43868 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SLC28A2O43868 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SLC28A2O43868 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.5■□□□□ 0.55
SLC28A2O43868 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SLC28A2O43868 TREX1-205ENST00000625293 1783 ntBASIC18.5■□□□□ 0.55
SLC28A2O43868 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SLC28A2O43868 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SLC28A2O43868 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.49■□□□□ 0.55
SLC28A2O43868 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SLC28A2O43868 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.49■□□□□ 0.55
SLC28A2O43868 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.49■□□□□ 0.55
SLC28A2O43868 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.49■□□□□ 0.55
SLC28A2O43868 AC073195.1-201ENST00000607241 877 ntBASIC18.49■□□□□ 0.55
SLC28A2O43868 REXO1L10P-201ENST00000615707 1290 ntBASIC18.49■□□□□ 0.55
SLC28A2O43868 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.49■□□□□ 0.55
SLC28A2O43868 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SLC28A2O43868 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.49■□□□□ 0.55
SLC28A2O43868 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.49■□□□□ 0.55
SLC28A2O43868 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.49■□□□□ 0.55
SLC28A2O43868 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SLC28A2O43868 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
SLC28A2O43868 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.49■□□□□ 0.55
SLC28A2O43868 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.49■□□□□ 0.55
SLC28A2O43868 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SLC28A2O43868 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SLC28A2O43868 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SLC28A2O43868 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SLC28A2O43868 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SLC28A2O43868 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SLC28A2O43868 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SLC28A2O43868 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SLC28A2O43868 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SLC28A2O43868 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SLC28A2O43868 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SLC28A2O43868 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SLC28A2O43868 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SLC28A2O43868 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.48■□□□□ 0.55
SLC28A2O43868 AL390955.1-201ENST00000428694 934 ntBASIC18.48■□□□□ 0.55
SLC28A2O43868 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.48■□□□□ 0.55
SLC28A2O43868 NUDT16P1-203ENST00000513809 620 ntBASIC18.48■□□□□ 0.55
SLC28A2O43868 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.48■□□□□ 0.55
SLC28A2O43868 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.48■□□□□ 0.55
SLC28A2O43868 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.48■□□□□ 0.55
SLC28A2O43868 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.48■□□□□ 0.55
SLC28A2O43868 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.48■□□□□ 0.55
SLC28A2O43868 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SLC28A2O43868 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SLC28A2O43868 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SLC28A2O43868 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SLC28A2O43868 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SLC28A2O43868 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.48■□□□□ 0.55
SLC28A2O43868 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SLC28A2O43868 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SLC28A2O43868 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.48■□□□□ 0.55
SLC28A2O43868 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
SLC28A2O43868 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms