Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.9■□□□□ 0.46
HMGN4O00479 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
HMGN4O00479 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.9■□□□□ 0.46
HMGN4O00479 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HMGN4O00479 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.9■□□□□ 0.46
HMGN4O00479 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGN4O00479 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
HMGN4O00479 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
HMGN4O00479 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.9■□□□□ 0.46
HMGN4O00479 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HMGN4O00479 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.9■□□□□ 0.46
HMGN4O00479 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HMGN4O00479 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGN4O00479 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.9■□□□□ 0.46
HMGN4O00479 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
HMGN4O00479 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HMGN4O00479 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGN4O00479 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGN4O00479 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
HMGN4O00479 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HMGN4O00479 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HMGN4O00479 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HMGN4O00479 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.89■□□□□ 0.46
HMGN4O00479 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGN4O00479 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGN4O00479 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGN4O00479 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGN4O00479 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGN4O00479 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGN4O00479 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGN4O00479 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.89■□□□□ 0.45
HMGN4O00479 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGN4O00479 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGN4O00479 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGN4O00479 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGN4O00479 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
HMGN4O00479 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGN4O00479 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
HMGN4O00479 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGN4O00479 MTDHP1-201ENST00000605323 784 ntBASIC17.89■□□□□ 0.45
HMGN4O00479 AC069544.1-201ENST00000609399 999 ntBASIC17.89■□□□□ 0.45
HMGN4O00479 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGN4O00479 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
HMGN4O00479 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGN4O00479 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGN4O00479 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
HMGN4O00479 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGN4O00479 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGN4O00479 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGN4O00479 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGN4O00479 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
HMGN4O00479 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGN4O00479 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGN4O00479 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGN4O00479 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 KRT17P3-201ENST00000420566 1262 ntBASIC17.88■□□□□ 0.45
HMGN4O00479 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.88■□□□□ 0.45
HMGN4O00479 AC026366.1-201ENST00000488803 879 ntBASIC17.88■□□□□ 0.45
HMGN4O00479 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGN4O00479 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
HMGN4O00479 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGN4O00479 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 C1QL1P1-201ENST00000568105 661 ntBASIC17.88■□□□□ 0.45
HMGN4O00479 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.88■□□□□ 0.45
HMGN4O00479 FEM1AP3-201ENST00000403722 1741 ntBASIC17.88■□□□□ 0.45
HMGN4O00479 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGN4O00479 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
HMGN4O00479 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGN4O00479 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGN4O00479 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.87■□□□□ 0.45
HMGN4O00479 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.87■□□□□ 0.45
HMGN4O00479 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
HMGN4O00479 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.87■□□□□ 0.45
HMGN4O00479 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 AC233263.1-201ENST00000578059 224 ntBASIC17.87■□□□□ 0.45
HMGN4O00479 HLA-A-209ENST00000638375 975 ntBASIC17.87■□□□□ 0.45
HMGN4O00479 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGN4O00479 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms