Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXN3O00409 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXN3O00409 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
FOXN3O00409 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXN3O00409 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXN3O00409 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
FOXN3O00409 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.6■□□□□ 0.89
FOXN3O00409 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.6■□□□□ 0.89
FOXN3O00409 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXN3O00409 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.6■□□□□ 0.89
FOXN3O00409 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
FOXN3O00409 AL160286.2-201ENST00000567150 934 ntBASIC20.6■□□□□ 0.89
FOXN3O00409 AC110285.5-201ENST00000611501 352 ntBASIC20.6■□□□□ 0.89
FOXN3O00409 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
FOXN3O00409 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXN3O00409 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXN3O00409 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.6■□□□□ 0.89
FOXN3O00409 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXN3O00409 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXN3O00409 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXN3O00409 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.59■□□□□ 0.89
FOXN3O00409 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
FOXN3O00409 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.59■□□□□ 0.89
FOXN3O00409 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
FOXN3O00409 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
FOXN3O00409 AC006333.2-201ENST00000607957 2099 ntBASIC20.59■□□□□ 0.89
FOXN3O00409 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
FOXN3O00409 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.59■□□□□ 0.89
FOXN3O00409 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.59■□□□□ 0.89
FOXN3O00409 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.59■□□□□ 0.89
FOXN3O00409 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
FOXN3O00409 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
FOXN3O00409 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
FOXN3O00409 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
FOXN3O00409 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
FOXN3O00409 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
FOXN3O00409 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.59■□□□□ 0.89
FOXN3O00409 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
FOXN3O00409 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.59■□□□□ 0.89
FOXN3O00409 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
FOXN3O00409 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.58■□□□□ 0.89
FOXN3O00409 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
FOXN3O00409 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
FOXN3O00409 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.58■□□□□ 0.89
FOXN3O00409 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.58■□□□□ 0.89
FOXN3O00409 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
FOXN3O00409 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.58■□□□□ 0.89
FOXN3O00409 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
FOXN3O00409 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
FOXN3O00409 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
FOXN3O00409 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
FOXN3O00409 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.58■□□□□ 0.89
FOXN3O00409 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.58■□□□□ 0.89
FOXN3O00409 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
FOXN3O00409 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
FOXN3O00409 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
FOXN3O00409 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
FOXN3O00409 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
FOXN3O00409 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
FOXN3O00409 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.58■□□□□ 0.88
FOXN3O00409 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
FOXN3O00409 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
FOXN3O00409 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
FOXN3O00409 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.58■□□□□ 0.88
FOXN3O00409 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
FOXN3O00409 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
FOXN3O00409 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
FOXN3O00409 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
FOXN3O00409 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
FOXN3O00409 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.57■□□□□ 0.88
FOXN3O00409 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
FOXN3O00409 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
FOXN3O00409 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.57■□□□□ 0.88
FOXN3O00409 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
FOXN3O00409 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
FOXN3O00409 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
FOXN3O00409 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
FOXN3O00409 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
FOXN3O00409 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
FOXN3O00409 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.57■□□□□ 0.88
FOXN3O00409 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
FOXN3O00409 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.57■□□□□ 0.88
FOXN3O00409 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
FOXN3O00409 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.57■□□□□ 0.88
FOXN3O00409 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.57■□□□□ 0.88
FOXN3O00409 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.57■□□□□ 0.88
FOXN3O00409 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.57■□□□□ 0.88
FOXN3O00409 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
FOXN3O00409 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.57■□□□□ 0.88
FOXN3O00409 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.57■□□□□ 0.88
FOXN3O00409 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
FOXN3O00409 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.57■□□□□ 0.88
FOXN3O00409 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
FOXN3O00409 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
FOXN3O00409 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.56■□□□□ 0.88
FOXN3O00409 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.56■□□□□ 0.88
FOXN3O00409 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.56■□□□□ 0.88
FOXN3O00409 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
FOXN3O00409 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.56■□□□□ 0.88
FOXN3O00409 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms