Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AP000525.1-201ENST00000608286 694 ntBASIC19.68■□□□□ 0.74
CBX4O00257 AC130371.2-201ENST00000619443 611 ntBASIC19.68■□□□□ 0.74
CBX4O00257 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CBX4O00257 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CBX4O00257 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CBX4O00257 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CBX4O00257 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CBX4O00257 AC079598.2-202ENST00000546624 1451 ntBASIC19.67■□□□□ 0.74
CBX4O00257 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CBX4O00257 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CBX4O00257 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CBX4O00257 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.67■□□□□ 0.74
CBX4O00257 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.67■□□□□ 0.74
CBX4O00257 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
CBX4O00257 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.67■□□□□ 0.74
CBX4O00257 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CBX4O00257 AC012306.2-201ENST00000609350 630 ntBASIC19.67■□□□□ 0.74
CBX4O00257 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CBX4O00257 AC097493.4-201ENST00000641197 219 ntBASIC19.67■□□□□ 0.74
CBX4O00257 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CBX4O00257 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CBX4O00257 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CBX4O00257 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CBX4O00257 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CBX4O00257 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CBX4O00257 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.67■□□□□ 0.74
CBX4O00257 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CBX4O00257 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CBX4O00257 SDHAP1-207ENST00000440850 2000 ntBASIC19.66■□□□□ 0.74
CBX4O00257 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.66■□□□□ 0.74
CBX4O00257 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CBX4O00257 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CBX4O00257 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CBX4O00257 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.66■□□□□ 0.74
CBX4O00257 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CBX4O00257 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CBX4O00257 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CBX4O00257 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.66■□□□□ 0.74
CBX4O00257 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.66■□□□□ 0.74
CBX4O00257 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.66■□□□□ 0.74
CBX4O00257 AC008040.2-201ENST00000461049 708 ntBASIC19.66■□□□□ 0.74
CBX4O00257 AC091390.4-202ENST00000476426 537 ntBASIC19.66■□□□□ 0.74
CBX4O00257 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.66■□□□□ 0.74
CBX4O00257 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.66■□□□□ 0.74
CBX4O00257 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.66■□□□□ 0.74
CBX4O00257 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.66■□□□□ 0.74
CBX4O00257 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.66■□□□□ 0.74
CBX4O00257 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.66■□□□□ 0.74
CBX4O00257 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CBX4O00257 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.66■□□□□ 0.74
CBX4O00257 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CBX4O00257 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CBX4O00257 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.66■□□□□ 0.74
CBX4O00257 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.66■□□□□ 0.74
CBX4O00257 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.66■□□□□ 0.74
CBX4O00257 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CBX4O00257 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CBX4O00257 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CBX4O00257 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.65■□□□□ 0.74
CBX4O00257 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.65■□□□□ 0.74
CBX4O00257 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CBX4O00257 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CBX4O00257 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CBX4O00257 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CBX4O00257 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CBX4O00257 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.65■□□□□ 0.74
CBX4O00257 MIR1238-201ENST00000408483 83 ntBASIC19.65■□□□□ 0.74
CBX4O00257 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.65■□□□□ 0.74
CBX4O00257 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.65■□□□□ 0.74
CBX4O00257 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CBX4O00257 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.65■□□□□ 0.74
CBX4O00257 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.65■□□□□ 0.74
CBX4O00257 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CBX4O00257 KRT8P41-201ENST00000533985 1514 ntBASIC19.65■□□□□ 0.74
CBX4O00257 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
CBX4O00257 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CBX4O00257 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CBX4O00257 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.64■□□□□ 0.74
CBX4O00257 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.74
CBX4O00257 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CBX4O00257 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CBX4O00257 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CBX4O00257 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.64■□□□□ 0.73
CBX4O00257 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CBX4O00257 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.64■□□□□ 0.73
CBX4O00257 AL390955.1-201ENST00000428694 934 ntBASIC19.64■□□□□ 0.73
CBX4O00257 FAM207BP-201ENST00000447172 505 ntBASIC19.64■□□□□ 0.73
CBX4O00257 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CBX4O00257 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.64■□□□□ 0.73
CBX4O00257 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CBX4O00257 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.64■□□□□ 0.73
CBX4O00257 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CBX4O00257 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.64■□□□□ 0.73
CBX4O00257 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.64■□□□□ 0.73
CBX4O00257 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.64■□□□□ 0.73
CBX4O00257 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.64■□□□□ 0.73
CBX4O00257 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CBX4O00257 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CBX4O00257 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.63■□□□□ 0.73
CBX4O00257 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms