Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 Z98044.1-201ENST00000632503 1764 ntBASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 AF201337.1-201ENST00000520239 748 ntBASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 AL050303.2-201ENST00000619798 666 ntBASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 AC006557.6-201ENST00000623071 864 ntBASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM49D1C9J1S8 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM49D1C9J1S8 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.27■□□□□ 0.67
TRIM49D1C9J1S8 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM49D1C9J1S8 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.27■□□□□ 0.67
TRIM49D1C9J1S8 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM49D1C9J1S8 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
TRIM49D1C9J1S8 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 AC138932.1-201ENST00000534164 6830 ntBASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 RPS2P52-201ENST00000469610 820 ntBASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 AC090164.3-201ENST00000610780 2143 ntBASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM49D1C9J1S8 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 AC022517.1-201ENST00000592429 346 ntBASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM49D1C9J1S8 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM49D1C9J1S8 AL512353.2-201ENST00000448759 1962 ntBASIC19.24■□□□□ 0.67
TRIM49D1C9J1S8 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM49D1C9J1S8 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM49D1C9J1S8 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM49D1C9J1S8 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM49D1C9J1S8 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM49D1C9J1S8 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM49D1C9J1S8 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM49D1C9J1S8 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM49D1C9J1S8 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM49D1C9J1S8 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.24■□□□□ 0.67
TRIM49D1C9J1S8 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms