Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL136964.1-201ENST00000622038 2990 ntBASIC2.72□□□□□ -1.97
COL6A3P12111 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.72□□□□□ -1.97
COL6A3P12111 AL512646.1-201ENST00000269395 1077 ntBASIC2.72□□□□□ -1.97
COL6A3P12111 AC005840.1-201ENST00000498412 377 ntBASIC2.72□□□□□ -1.97
COL6A3P12111 AC234781.5-201ENST00000508429 271 ntBASIC2.72□□□□□ -1.97
COL6A3P12111 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC2.72□□□□□ -1.97
COL6A3P12111 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.72□□□□□ -1.97
COL6A3P12111 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL6A3P12111 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL6A3P12111 RNA5SP270-201ENST00000411361 118 ntBASIC2.72□□□□□ -1.97
COL6A3P12111 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.72□□□□□ -1.97
COL6A3P12111 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.72□□□□□ -1.97
COL6A3P12111 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.72□□□□□ -1.97
COL6A3P12111 AC074029.1-201ENST00000552531 1044 ntBASIC2.72□□□□□ -1.97
COL6A3P12111 AC011494.1-201ENST00000596454 237 ntBASIC2.72□□□□□ -1.97
COL6A3P12111 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC2.72□□□□□ -1.97
COL6A3P12111 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.72□□□□□ -1.97
COL6A3P12111 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL6A3P12111 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL6A3P12111 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.97
COL6A3P12111 RNY1P10-201ENST00000363268 113 ntBASIC2.71□□□□□ -1.97
COL6A3P12111 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC2.71□□□□□ -1.97
COL6A3P12111 RPLP0P7-201ENST00000416050 667 ntBASIC2.71□□□□□ -1.97
COL6A3P12111 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.71□□□□□ -1.97
COL6A3P12111 AC004866.2-201ENST00000438285 481 ntBASIC2.71□□□□□ -1.97
COL6A3P12111 AC126121.1-201ENST00000482313 553 ntBASIC2.71□□□□□ -1.97
COL6A3P12111 OR4T1P-201ENST00000554933 911 ntBASIC2.71□□□□□ -1.97
COL6A3P12111 CYP2C60P-201ENST00000566088 139 ntBASIC2.71□□□□□ -1.97
COL6A3P12111 SNORA35B-201ENST00000607417 129 ntBASIC2.71□□□□□ -1.97
COL6A3P12111 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC2.71□□□□□ -1.98
COL6A3P12111 AL049555.1-201ENST00000562834 1933 ntBASIC2.71□□□□□ -1.98
COL6A3P12111 AC011460.1-201ENST00000636268 1834 ntBASIC2.71□□□□□ -1.98
COL6A3P12111 GSTA9P-201ENST00000406231 611 ntBASIC2.71□□□□□ -1.98
COL6A3P12111 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC2.71□□□□□ -1.98
COL6A3P12111 CR769767.1-201ENST00000436337 346 ntBASIC2.71□□□□□ -1.98
COL6A3P12111 AC034244.2-201ENST00000514668 858 ntBASIC2.71□□□□□ -1.98
COL6A3P12111 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC2.71□□□□□ -1.98
COL6A3P12111 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC2.71□□□□□ -1.98
COL6A3P12111 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
COL6A3P12111 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC2.71□□□□□ -1.98
COL6A3P12111 DNAJC19P4-201ENST00000440115 345 ntBASIC2.71□□□□□ -1.98
COL6A3P12111 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.71□□□□□ -1.98
COL6A3P12111 SNORA31.1-201ENST00000515993 133 ntBASIC2.71□□□□□ -1.98
COL6A3P12111 SNORA31.5-201ENST00000516190 133 ntBASIC2.71□□□□□ -1.98
COL6A3P12111 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.71□□□□□ -1.98
COL6A3P12111 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.71□□□□□ -1.98
COL6A3P12111 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
COL6A3P12111 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.71□□□□□ -1.98
COL6A3P12111 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC2.7□□□□□ -1.98
COL6A3P12111 HMGB1P10-201ENST00000395823 563 ntBASIC2.7□□□□□ -1.98
COL6A3P12111 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC2.7□□□□□ -1.98
COL6A3P12111 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC2.7□□□□□ -1.98
COL6A3P12111 AC087385.1-201ENST00000475062 312 ntBASIC2.7□□□□□ -1.98
COL6A3P12111 NIPA2P2-201ENST00000496376 1083 ntBASIC2.7□□□□□ -1.98
COL6A3P12111 AC233280.2-201ENST00000603917 1070 ntBASIC2.7□□□□□ -1.98
COL6A3P12111 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
COL6A3P12111 RFX3-203ENST00000381984 364 ntTSL 3 BASIC2.7□□□□□ -1.98
COL6A3P12111 AC245291.1-201ENST00000419501 328 ntBASIC2.7□□□□□ -1.98
COL6A3P12111 RPS6P2-201ENST00000454208 705 ntBASIC2.7□□□□□ -1.98
COL6A3P12111 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC2.7□□□□□ -1.98
COL6A3P12111 HNRNPKP5-201ENST00000515300 253 ntBASIC2.7□□□□□ -1.98
COL6A3P12111 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC2.7□□□□□ -1.98
COL6A3P12111 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.7□□□□□ -1.98
COL6A3P12111 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC2.7□□□□□ -1.98
COL6A3P12111 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.69□□□□□ -1.98
COL6A3P12111 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.69□□□□□ -1.98
COL6A3P12111 RPL23AP31-201ENST00000456160 467 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 AC080013.2-201ENST00000460866 323 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 AP001086.1-201ENST00000494882 321 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 ELOCP31-201ENST00000540463 467 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
COL6A3P12111 MIR3199-1-201ENST00000582434 88 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 AC023813.4-201ENST00000607580 580 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC2.69□□□□□ -1.98
COL6A3P12111 AL031985.3-201ENST00000565390 2449 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
COL6A3P12111 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.69□□□□□ -1.98
COL6A3P12111 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL6A3P12111 AC090543.2-201ENST00000483963 348 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.69□□□□□ -1.98
COL6A3P12111 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.69□□□□□ -1.98
COL6A3P12111 AC096720.1-201ENST00000604441 183 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 APOOP1-201ENST00000604695 592 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 AC103710.2-201ENST00000609912 942 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 AC091903.1-201ENST00000624322 454 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL6A3P12111 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.69□□□□□ -1.98
COL6A3P12111 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
COL6A3P12111 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC2.69□□□□□ -1.98
COL6A3P12111 AL138820.1-201ENST00000617901 5305 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
COL6A3P12111 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
COL6A3P12111 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.69□□□□□ -1.98
COL6A3P12111 Y_RNA.224-201ENST00000364308 111 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 EI24P2-201ENST00000397776 1076 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 AC009238.1-201ENST00000442165 424 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.69□□□□□ -1.98
COL6A3P12111 AC009237.6-201ENST00000446969 424 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 HMGB1P16-201ENST00000447155 540 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms