Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 MTND2P25-201ENST00000449028 610 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 HMGB1P26-201ENST00000452520 628 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 RPS3AP50-201ENST00000487064 803 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 OR9N1P-202ENST00000494289 481 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 NIPA2P2-201ENST00000496376 1083 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 RNA5SP356-201ENST00000515972 94 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 AC107934.2-201ENST00000518653 310 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.2□□□□□ -1.9
CXCL12P48061 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CXCL12P48061 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.2□□□□□ -1.9
CXCL12P48061 OR5AP1P-201ENST00000529730 940 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.2□□□□□ -1.9
CXCL12P48061 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CXCL12P48061 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.2□□□□□ -1.9
CXCL12P48061 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC3.2□□□□□ -1.9
CXCL12P48061 GTF3AP2-201ENST00000557014 266 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.2□□□□□ -1.9
CXCL12P48061 AC141257.3-201ENST00000572906 215 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 MIR3162-201ENST00000581818 82 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.2□□□□□ -1.9
CXCL12P48061 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC3.2□□□□□ -1.9
CXCL12P48061 AC055764.2-201ENST00000610089 670 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 AC011472.4-201ENST00000615848 491 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 AC004943.3-201ENST00000624116 600 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC3.2□□□□□ -1.9
CXCL12P48061 NCAPGP1-201ENST00000505112 1814 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CXCL12P48061 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.2□□□□□ -1.9
CXCL12P48061 AC009487.2-201ENST00000420969 6821 ntBASIC3.2□□□□□ -1.9
CXCL12P48061 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CXCL12P48061 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CXCL12P48061 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.19□□□□□ -1.9
CXCL12P48061 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CXCL12P48061 HSPA8P1-201ENST00000425843 1833 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.19□□□□□ -1.9
CXCL12P48061 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CXCL12P48061 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
CXCL12P48061 SNORD51.1-201ENST00000365405 77 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 RNU6-185P-201ENST00000384421 107 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 SNORD15B-201ENST00000384714 146 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC3.19□□□□□ -1.9
CXCL12P48061 EEF1A1P41-201ENST00000414667 207 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CXCL12P48061 ZNF965P-201ENST00000432501 817 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 USP9YP7-201ENST00000436723 430 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC3.19□□□□□ -1.9
CXCL12P48061 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.19□□□□□ -1.9
CXCL12P48061 HMGB1P16-201ENST00000447155 540 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 AC112492.1-201ENST00000449607 712 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 USP9YP32-201ENST00000452432 430 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 RPL31P50-201ENST00000471002 296 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 RPS26P15-201ENST00000488067 348 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 AL035404.1-201ENST00000497982 568 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.19□□□□□ -1.9
CXCL12P48061 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 RN7SKP272-201ENST00000516988 232 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
CXCL12P48061 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.19□□□□□ -1.9
CXCL12P48061 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
CXCL12P48061 AL049870.4-201ENST00000555741 486 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 AL731537.2-201ENST00000561565 951 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 ELOCP29-201ENST00000588193 334 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC3.19□□□□□ -1.9
CXCL12P48061 AC013412.1-201ENST00000610687 192 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 AC105227.2-201ENST00000615075 605 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 AC025016.1-201ENST00000616746 682 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 AC009318.3-201ENST00000616916 503 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 AP003485.2-201ENST00000623636 610 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
CXCL12P48061 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
CXCL12P48061 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.19□□□□□ -1.9
CXCL12P48061 ZNF90P1-201ENST00000480493 1951 ntBASIC3.19□□□□□ -1.9
CXCL12P48061 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CXCL12P48061 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CXCL12P48061 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CXCL12P48061 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CXCL12P48061 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.18□□□□□ -1.9
CXCL12P48061 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.18□□□□□ -1.9
CXCL12P48061 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
CXCL12P48061 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.18□□□□□ -1.9
CXCL12P48061 RNU6-452P-201ENST00000384406 107 ntBASIC3.18□□□□□ -1.9
CXCL12P48061 SNORA48.8-201ENST00000391324 134 ntBASIC3.18□□□□□ -1.9
CXCL12P48061 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CXCL12P48061 AL391417.1-201ENST00000404100 426 ntBASIC3.18□□□□□ -1.9
CXCL12P48061 AL353692.2-201ENST00000407054 335 ntBASIC3.18□□□□□ -1.9
CXCL12P48061 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC3.18□□□□□ -1.9
CXCL12P48061 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.18□□□□□ -1.9
CXCL12P48061 FAM204CP-201ENST00000424489 642 ntBASIC3.18□□□□□ -1.9
CXCL12P48061 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.18□□□□□ -1.9
CXCL12P48061 IFNNP1-201ENST00000429219 553 ntBASIC3.18□□□□□ -1.9
CXCL12P48061 SKP1P1-201ENST00000438081 489 ntBASIC3.18□□□□□ -1.9
CXCL12P48061 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.18□□□□□ -1.9
CXCL12P48061 RPL32P28-201ENST00000443577 397 ntBASIC3.18□□□□□ -1.9
CXCL12P48061 AL500527.1-201ENST00000448532 255 ntBASIC3.18□□□□□ -1.9
CXCL12P48061 HMGB3P22-202ENST00000451823 572 ntBASIC3.18□□□□□ -1.9
CXCL12P48061 AC089999.1-201ENST00000460336 374 ntBASIC3.18□□□□□ -1.9
CXCL12P48061 AC068724.1-201ENST00000487100 792 ntBASIC3.18□□□□□ -1.9
CXCL12P48061 AC025459.1-201ENST00000504072 156 ntBASIC3.18□□□□□ -1.9
CXCL12P48061 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.18□□□□□ -1.9
CXCL12P48061 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms