Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 SOX15-203ENST00000570788 1093 ntBASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 AC008687.6-201ENST00000596318 630 ntBASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 FEM1AP3-201ENST00000403722 1741 ntBASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.12■□□□□ 0.81
PCDHA3Q9Y5H8 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.11■□□□□ 0.81
PCDHA3Q9Y5H8 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHA3Q9Y5H8 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHA3Q9Y5H8 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHA3Q9Y5H8 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms