Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LSM4Q9Y4Z0 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC15.41■□□□□ 0.06
LSM4Q9Y4Z0 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC15.41■□□□□ 0.06
LSM4Q9Y4Z0 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 AL589743.5-201ENST00000616611 1050 ntBASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 EML3-217ENST00000531557 2509 ntTSL 5 BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
LSM4Q9Y4Z0 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 AC006333.2-201ENST00000607957 2099 ntBASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC15.39■□□□□ 0.05
LSM4Q9Y4Z0 AC005082.1-201ENST00000413042 2259 ntBASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 AC141586.3-201ENST00000562166 1838 ntBASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 GCK-205ENST00000437084 1385 ntTSL 5 BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 AC120498.9-201ENST00000339021 3867 ntBASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 RPPH1-201ENST00000516869 333 ntBASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 AC023632.3-201ENST00000521633 145 ntBASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC15.38■□□□□ 0.05
LSM4Q9Y4Z0 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms