Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 AL390955.1-201ENST00000428694 934 ntBASIC19.36■□□□□ 0.69
DKK3Q9UBP4 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 KRT8P9-201ENST00000558927 1449 ntBASIC19.35■□□□□ 0.69
DKK3Q9UBP4 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 SLC25A1P4-201ENST00000567977 778 ntBASIC19.35■□□□□ 0.69
DKK3Q9UBP4 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 AC133561.5-201ENST00000635547 218 ntBASIC19.35■□□□□ 0.69
DKK3Q9UBP4 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.35■□□□□ 0.69
DKK3Q9UBP4 AC125437.2-201ENST00000625180 2167 ntBASIC19.34■□□□□ 0.69
DKK3Q9UBP4 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 CRYGFP-201ENST00000418459 633 ntBASIC19.34■□□□□ 0.69
DKK3Q9UBP4 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 NAPSB-206ENST00000562112 1266 ntBASIC19.34■□□□□ 0.69
DKK3Q9UBP4 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
DKK3Q9UBP4 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.33■□□□□ 0.69
DKK3Q9UBP4 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
DKK3Q9UBP4 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.33■□□□□ 0.69
DKK3Q9UBP4 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
DKK3Q9UBP4 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.33■□□□□ 0.69
DKK3Q9UBP4 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
DKK3Q9UBP4 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
DKK3Q9UBP4 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
DKK3Q9UBP4 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
DKK3Q9UBP4 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 ECEL1P3-201ENST00000427961 737 ntBASIC19.33■□□□□ 0.68
DKK3Q9UBP4 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
DKK3Q9UBP4 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 MFAP1P1-201ENST00000442257 1255 ntBASIC19.32■□□□□ 0.68
DKK3Q9UBP4 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms