Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 AP001412.1-201ENST00000608405 714 ntBASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 AL353708.3-201ENST00000610272 989 ntBASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CUEDC1Q9NWM3 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 SDHAP1-207ENST00000440850 2000 ntBASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 AL353807.1-201ENST00000427475 662 ntBASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 AC233702.5-201ENST00000584107 538 ntBASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CUEDC1Q9NWM3 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 RPS2P55-201ENST00000397318 883 ntBASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 AC107956.1-201ENST00000494359 873 ntBASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CUEDC1Q9NWM3 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 AL445675.2-201ENST00000620291 557 ntBASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CUEDC1Q9NWM3 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
CUEDC1Q9NWM3 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms