Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 BX119927.1-201ENST00000636596 1552 ntBASIC17.61■□□□□ 0.41
DDX28Q9NUL7 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
DDX28Q9NUL7 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
DDX28Q9NUL7 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.61■□□□□ 0.41
DDX28Q9NUL7 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
DDX28Q9NUL7 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 GXYLT1P5-201ENST00000614548 1189 ntBASIC17.6■□□□□ 0.41
DDX28Q9NUL7 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 AC008694.1-202ENST00000636953 945 ntBASIC17.6■□□□□ 0.41
DDX28Q9NUL7 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 H19-201ENST00000411754 1788 ntTSL 5 BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.6■□□□□ 0.41
DDX28Q9NUL7 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 GCK-205ENST00000437084 1385 ntTSL 5 BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 AC026185.1-201ENST00000445748 174 ntBASIC17.59■□□□□ 0.41
DDX28Q9NUL7 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 CYP2T3P-201ENST00000601990 817 ntBASIC17.59■□□□□ 0.41
DDX28Q9NUL7 OR10C1-204ENST00000622521 1039 ntBASIC17.59■□□□□ 0.41
DDX28Q9NUL7 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.59■□□□□ 0.41
DDX28Q9NUL7 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
DDX28Q9NUL7 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
DDX28Q9NUL7 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
DDX28Q9NUL7 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
DDX28Q9NUL7 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
DDX28Q9NUL7 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.58■□□□□ 0.41
DDX28Q9NUL7 AC125437.2-201ENST00000625180 2167 ntBASIC17.58■□□□□ 0.4
DDX28Q9NUL7 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
DDX28Q9NUL7 KRT18P68-201ENST00000392293 1000 ntBASIC17.58■□□□□ 0.4
DDX28Q9NUL7 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
DDX28Q9NUL7 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.58■□□□□ 0.4
DDX28Q9NUL7 AC073111.5-205ENST00000641717 521 ntBASIC17.58■□□□□ 0.4
DDX28Q9NUL7 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
DDX28Q9NUL7 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
DDX28Q9NUL7 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
DDX28Q9NUL7 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
DDX28Q9NUL7 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
DDX28Q9NUL7 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
DDX28Q9NUL7 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
DDX28Q9NUL7 PTBP1P-201ENST00000554374 1601 ntBASIC17.58■□□□□ 0.4
DDX28Q9NUL7 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
DDX28Q9NUL7 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.57■□□□□ 0.4
DDX28Q9NUL7 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms