Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 AL355075.4-201ENST00000554988 638 ntBASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 MIR6786-201ENST00000616843 113 ntBASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 ZNF815P-204ENST00000434898 1737 ntBASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 AC011506.1-201ENST00000474329 610 ntBASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 Z85996.1-201ENST00000494644 937 ntBASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 AC130371.2-201ENST00000619443 611 ntBASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 AC104417.2-201ENST00000562989 1793 ntBASIC19.09■□□□□ 0.65
TRIM39Q9HCM9 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.08■□□□□ 0.65
TRIM39Q9HCM9 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
TRIM39Q9HCM9 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM39Q9HCM9 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM39Q9HCM9 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.65
TRIM39Q9HCM9 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 MESTP1-201ENST00000404287 994 ntBASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 B3GAT3P1-201ENST00000471720 806 ntBASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
TRIM39Q9HCM9 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 RCC2P6-201ENST00000526625 1557 ntBASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 AC004951.3-201ENST00000418645 1148 ntBASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 TSPY15P-201ENST00000457163 923 ntBASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM39Q9HCM9 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
TRIM39Q9HCM9 UNC93B2-201ENST00000285383 730 ntBASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms