Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIME1Q9H400 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIME1Q9H400 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
LIME1Q9H400 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC16.91■□□□□ 0.3
LIME1Q9H400 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LIME1Q9H400 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIME1Q9H400 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIME1Q9H400 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIME1Q9H400 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIME1Q9H400 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIME1Q9H400 AC098818.2-201ENST00000564925 2320 ntBASIC16.9■□□□□ 0.3
LIME1Q9H400 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LIME1Q9H400 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIME1Q9H400 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIME1Q9H400 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIME1Q9H400 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIME1Q9H400 AC117947.1-201ENST00000427448 529 ntBASIC16.9■□□□□ 0.3
LIME1Q9H400 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC16.9■□□□□ 0.3
LIME1Q9H400 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.9■□□□□ 0.3
LIME1Q9H400 AC097488.1-201ENST00000507834 756 ntBASIC16.9■□□□□ 0.3
LIME1Q9H400 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIME1Q9H400 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LIME1Q9H400 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.9■□□□□ 0.3
LIME1Q9H400 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.9■□□□□ 0.3
LIME1Q9H400 AC091076.1-201ENST00000610741 619 ntBASIC16.9■□□□□ 0.3
LIME1Q9H400 FAM87A-204ENST00000613235 858 ntBASIC16.9■□□□□ 0.3
LIME1Q9H400 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.9■□□□□ 0.3
LIME1Q9H400 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LIME1Q9H400 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.9■□□□□ 0.3
LIME1Q9H400 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIME1Q9H400 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIME1Q9H400 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.9■□□□□ 0.3
LIME1Q9H400 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIME1Q9H400 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIME1Q9H400 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LIME1Q9H400 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIME1Q9H400 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC16.89■□□□□ 0.3
LIME1Q9H400 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LIME1Q9H400 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
LIME1Q9H400 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.89■□□□□ 0.29
LIME1Q9H400 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC16.89■□□□□ 0.29
LIME1Q9H400 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.89■□□□□ 0.29
LIME1Q9H400 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
LIME1Q9H400 BX664615.1-201ENST00000443558 458 ntBASIC16.89■□□□□ 0.29
LIME1Q9H400 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 KRT18P56-201ENST00000507275 550 ntBASIC16.89■□□□□ 0.29
LIME1Q9H400 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.89■□□□□ 0.29
LIME1Q9H400 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
LIME1Q9H400 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIME1Q9H400 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIME1Q9H400 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIME1Q9H400 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIME1Q9H400 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC16.88■□□□□ 0.29
LIME1Q9H400 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
LIME1Q9H400 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIME1Q9H400 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIME1Q9H400 AL691432.2-201ENST00000607222 2038 ntBASIC16.88■□□□□ 0.29
LIME1Q9H400 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIME1Q9H400 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.88■□□□□ 0.29
LIME1Q9H400 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC16.88■□□□□ 0.29
LIME1Q9H400 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
LIME1Q9H400 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
LIME1Q9H400 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LIME1Q9H400 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIME1Q9H400 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIME1Q9H400 AP005242.2-201ENST00000580065 1175 ntBASIC16.88■□□□□ 0.29
LIME1Q9H400 AC139887.4-201ENST00000607877 719 ntBASIC16.88■□□□□ 0.29
LIME1Q9H400 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIME1Q9H400 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIME1Q9H400 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIME1Q9H400 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
LIME1Q9H400 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LIME1Q9H400 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIME1Q9H400 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC16.88■□□□□ 0.29
LIME1Q9H400 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIME1Q9H400 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIME1Q9H400 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIME1Q9H400 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC16.87■□□□□ 0.29
LIME1Q9H400 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC16.87■□□□□ 0.29
LIME1Q9H400 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIME1Q9H400 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC16.87■□□□□ 0.29
LIME1Q9H400 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms