Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MMP28Q9H239 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MMP28Q9H239 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.95■□□□□ 0.3
MMP28Q9H239 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
MMP28Q9H239 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
MMP28Q9H239 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.95■□□□□ 0.3
MMP28Q9H239 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MMP28Q9H239 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC16.95■□□□□ 0.3
MMP28Q9H239 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC16.95■□□□□ 0.3
MMP28Q9H239 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.95■□□□□ 0.3
MMP28Q9H239 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MMP28Q9H239 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
MMP28Q9H239 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MMP28Q9H239 PARP1-202ENST00000366792 553 ntTSL 3 BASIC16.95■□□□□ 0.3
MMP28Q9H239 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MMP28Q9H239 AC016769.1-201ENST00000409132 1010 ntBASIC16.95■□□□□ 0.3
MMP28Q9H239 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC16.95■□□□□ 0.3
MMP28Q9H239 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC16.95■□□□□ 0.3
MMP28Q9H239 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC16.95■□□□□ 0.3
MMP28Q9H239 TFG-210ENST00000620299 1289 ntTSL 5 BASIC16.95■□□□□ 0.3
MMP28Q9H239 MYCNOS-205ENST00000641950 531 ntBASIC16.95■□□□□ 0.3
MMP28Q9H239 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MMP28Q9H239 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MMP28Q9H239 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MMP28Q9H239 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.95■□□□□ 0.3
MMP28Q9H239 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MMP28Q9H239 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC16.95■□□□□ 0.3
MMP28Q9H239 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
MMP28Q9H239 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
MMP28Q9H239 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC16.95■□□□□ 0.3
MMP28Q9H239 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MMP28Q9H239 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MMP28Q9H239 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC16.95■□□□□ 0.3
MMP28Q9H239 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
MMP28Q9H239 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC16.94■□□□□ 0.3
MMP28Q9H239 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
MMP28Q9H239 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.94■□□□□ 0.3
MMP28Q9H239 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
MMP28Q9H239 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
MMP28Q9H239 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 PRORSD1P-202ENST00000563365 2154 ntBASIC16.94■□□□□ 0.3
MMP28Q9H239 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC16.94■□□□□ 0.3
MMP28Q9H239 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC16.94■□□□□ 0.3
MMP28Q9H239 HSCB-202ENST00000398941 955 ntTSL 2 BASIC16.94■□□□□ 0.3
MMP28Q9H239 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC16.94■□□□□ 0.3
MMP28Q9H239 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC16.94■□□□□ 0.3
MMP28Q9H239 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
MMP28Q9H239 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.94■□□□□ 0.3
MMP28Q9H239 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MMP28Q9H239 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC16.93■□□□□ 0.3
MMP28Q9H239 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.93■□□□□ 0.3
MMP28Q9H239 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC16.93■□□□□ 0.3
MMP28Q9H239 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
MMP28Q9H239 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
MMP28Q9H239 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
MMP28Q9H239 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.93■□□□□ 0.3
MMP28Q9H239 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.93■□□□□ 0.3
MMP28Q9H239 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
MMP28Q9H239 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC16.93■□□□□ 0.3
MMP28Q9H239 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
MMP28Q9H239 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC16.93■□□□□ 0.3
MMP28Q9H239 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
MMP28Q9H239 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC16.93■□□□□ 0.3
MMP28Q9H239 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC16.93■□□□□ 0.3
MMP28Q9H239 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC16.93■□□□□ 0.3
MMP28Q9H239 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
MMP28Q9H239 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
MMP28Q9H239 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
MMP28Q9H239 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
MMP28Q9H239 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms