Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM4Q9C037 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM4Q9C037 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM4Q9C037 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM4Q9C037 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.16■□□□□ 0.66
TRIM4Q9C037 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
TRIM4Q9C037 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM4Q9C037 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.16■□□□□ 0.66
TRIM4Q9C037 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.16■□□□□ 0.66
TRIM4Q9C037 RCN1P1-201ENST00000400413 996 ntBASIC19.16■□□□□ 0.66
TRIM4Q9C037 TSPY7P-201ENST00000431358 1114 ntBASIC19.16■□□□□ 0.66
TRIM4Q9C037 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM4Q9C037 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.16■□□□□ 0.66
TRIM4Q9C037 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.16■□□□□ 0.66
TRIM4Q9C037 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TRIM4Q9C037 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
TRIM4Q9C037 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
TRIM4Q9C037 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM4Q9C037 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM4Q9C037 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.16■□□□□ 0.66
TRIM4Q9C037 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.16■□□□□ 0.66
TRIM4Q9C037 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM4Q9C037 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.15■□□□□ 0.66
TRIM4Q9C037 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM4Q9C037 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.15■□□□□ 0.66
TRIM4Q9C037 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
TRIM4Q9C037 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 AC007322.3-201ENST00000426526 701 ntBASIC19.15■□□□□ 0.66
TRIM4Q9C037 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
TRIM4Q9C037 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.15■□□□□ 0.66
TRIM4Q9C037 AC233263.1-201ENST00000578059 224 ntBASIC19.15■□□□□ 0.66
TRIM4Q9C037 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.15■□□□□ 0.66
TRIM4Q9C037 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TRIM4Q9C037 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.15■□□□□ 0.66
TRIM4Q9C037 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
TRIM4Q9C037 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM4Q9C037 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.15■□□□□ 0.66
TRIM4Q9C037 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 KRT8P36-201ENST00000489121 1440 ntBASIC19.15■□□□□ 0.66
TRIM4Q9C037 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM4Q9C037 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRIM4Q9C037 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRIM4Q9C037 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.14■□□□□ 0.66
TRIM4Q9C037 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.14■□□□□ 0.66
TRIM4Q9C037 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRIM4Q9C037 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM4Q9C037 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM4Q9C037 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM4Q9C037 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
TRIM4Q9C037 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
TRIM4Q9C037 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM4Q9C037 ARMC10P1-201ENST00000313754 855 ntBASIC19.14■□□□□ 0.65
TRIM4Q9C037 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM4Q9C037 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.14■□□□□ 0.65
TRIM4Q9C037 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM4Q9C037 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.14■□□□□ 0.65
TRIM4Q9C037 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM4Q9C037 KRT18P35-201ENST00000510488 1269 ntBASIC19.14■□□□□ 0.65
TRIM4Q9C037 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.14■□□□□ 0.65
TRIM4Q9C037 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.14■□□□□ 0.65
TRIM4Q9C037 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM4Q9C037 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM4Q9C037 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM4Q9C037 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.14■□□□□ 0.65
TRIM4Q9C037 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM4Q9C037 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
TRIM4Q9C037 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM4Q9C037 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM4Q9C037 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms