Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.16■□□□□ 0.34
USB1Q9BQ65 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.16■□□□□ 0.34
USB1Q9BQ65 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
USB1Q9BQ65 TSPY7P-201ENST00000431358 1114 ntBASIC17.16■□□□□ 0.34
USB1Q9BQ65 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.16■□□□□ 0.34
USB1Q9BQ65 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.16■□□□□ 0.34
USB1Q9BQ65 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
USB1Q9BQ65 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.16■□□□□ 0.34
USB1Q9BQ65 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.16■□□□□ 0.34
USB1Q9BQ65 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.16■□□□□ 0.34
USB1Q9BQ65 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.16■□□□□ 0.34
USB1Q9BQ65 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.16■□□□□ 0.34
USB1Q9BQ65 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.16■□□□□ 0.34
USB1Q9BQ65 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USB1Q9BQ65 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.16■□□□□ 0.34
USB1Q9BQ65 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
USB1Q9BQ65 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
USB1Q9BQ65 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.16■□□□□ 0.34
USB1Q9BQ65 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
USB1Q9BQ65 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 PCDHAC2-203ENST00000615316 3011 ntBASIC17.15■□□□□ 0.34
USB1Q9BQ65 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USB1Q9BQ65 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
USB1Q9BQ65 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USB1Q9BQ65 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USB1Q9BQ65 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USB1Q9BQ65 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USB1Q9BQ65 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
USB1Q9BQ65 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USB1Q9BQ65 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USB1Q9BQ65 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USB1Q9BQ65 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USB1Q9BQ65 NUDT16P1-203ENST00000513809 620 ntBASIC17.15■□□□□ 0.34
USB1Q9BQ65 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USB1Q9BQ65 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
USB1Q9BQ65 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 AL445675.2-201ENST00000620291 557 ntBASIC17.15■□□□□ 0.34
USB1Q9BQ65 REXO1L12P-201ENST00000622156 912 ntBASIC17.15■□□□□ 0.34
USB1Q9BQ65 AL031985.4-201ENST00000642138 673 ntBASIC17.15■□□□□ 0.34
USB1Q9BQ65 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.15■□□□□ 0.34
USB1Q9BQ65 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USB1Q9BQ65 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
USB1Q9BQ65 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.34
USB1Q9BQ65 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.14■□□□□ 0.34
USB1Q9BQ65 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
USB1Q9BQ65 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.14■□□□□ 0.33
USB1Q9BQ65 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.14■□□□□ 0.33
USB1Q9BQ65 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.14■□□□□ 0.33
USB1Q9BQ65 BX088651.1-201ENST00000540551 451 ntBASIC17.14■□□□□ 0.33
USB1Q9BQ65 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 AP003071.4-201ENST00000562276 1284 ntBASIC17.14■□□□□ 0.33
USB1Q9BQ65 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.14■□□□□ 0.33
USB1Q9BQ65 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.14■□□□□ 0.33
USB1Q9BQ65 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.14■□□□□ 0.33
USB1Q9BQ65 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 AC005082.1-201ENST00000413042 2259 ntBASIC17.14■□□□□ 0.33
USB1Q9BQ65 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
USB1Q9BQ65 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.13■□□□□ 0.33
USB1Q9BQ65 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
USB1Q9BQ65 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USB1Q9BQ65 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USB1Q9BQ65 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.13■□□□□ 0.33
USB1Q9BQ65 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
USB1Q9BQ65 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USB1Q9BQ65 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
USB1Q9BQ65 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms