Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
VPS35Q96QK1 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS35Q96QK1 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
VPS35Q96QK1 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS35Q96QK1 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS35Q96QK1 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.13■□□□□ 0.65
VPS35Q96QK1 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS35Q96QK1 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
VPS35Q96QK1 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS35Q96QK1 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.13■□□□□ 0.65
VPS35Q96QK1 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS35Q96QK1 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS35Q96QK1 AL355355.2-201ENST00000442321 338 ntBASIC19.13■□□□□ 0.65
VPS35Q96QK1 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.13■□□□□ 0.65
VPS35Q96QK1 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.13■□□□□ 0.65
VPS35Q96QK1 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.13■□□□□ 0.65
VPS35Q96QK1 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
VPS35Q96QK1 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS35Q96QK1 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
VPS35Q96QK1 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS35Q96QK1 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS35Q96QK1 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.13■□□□□ 0.65
VPS35Q96QK1 LINC01465-201ENST00000408887 1940 ntBASIC19.13■□□□□ 0.65
VPS35Q96QK1 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS35Q96QK1 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.13■□□□□ 0.65
VPS35Q96QK1 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
VPS35Q96QK1 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS35Q96QK1 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS35Q96QK1 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS35Q96QK1 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
VPS35Q96QK1 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS35Q96QK1 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
VPS35Q96QK1 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS35Q96QK1 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VPS35Q96QK1 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS35Q96QK1 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS35Q96QK1 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS35Q96QK1 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS35Q96QK1 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS35Q96QK1 FSCN1P1-201ENST00000568912 1481 ntBASIC19.12■□□□□ 0.65
VPS35Q96QK1 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS35Q96QK1 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VPS35Q96QK1 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VPS35Q96QK1 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.12■□□□□ 0.65
VPS35Q96QK1 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.12■□□□□ 0.65
VPS35Q96QK1 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.12■□□□□ 0.65
VPS35Q96QK1 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS35Q96QK1 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.12■□□□□ 0.65
VPS35Q96QK1 MIR6786-201ENST00000616843 113 ntBASIC19.12■□□□□ 0.65
VPS35Q96QK1 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS35Q96QK1 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
VPS35Q96QK1 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS35Q96QK1 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS35Q96QK1 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS35Q96QK1 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS35Q96QK1 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.11■□□□□ 0.65
VPS35Q96QK1 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
VPS35Q96QK1 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS35Q96QK1 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
VPS35Q96QK1 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS35Q96QK1 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS35Q96QK1 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
VPS35Q96QK1 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.11■□□□□ 0.65
VPS35Q96QK1 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.11■□□□□ 0.65
VPS35Q96QK1 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
VPS35Q96QK1 AP003071.4-201ENST00000562276 1284 ntBASIC19.11■□□□□ 0.65
VPS35Q96QK1 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS35Q96QK1 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.11■□□□□ 0.65
VPS35Q96QK1 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS35Q96QK1 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.11■□□□□ 0.65
VPS35Q96QK1 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS35Q96QK1 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS35Q96QK1 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS35Q96QK1 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS35Q96QK1 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS35Q96QK1 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
VPS35Q96QK1 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
VPS35Q96QK1 RCC2P6-201ENST00000526625 1557 ntBASIC19.1■□□□□ 0.65
VPS35Q96QK1 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS35Q96QK1 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS35Q96QK1 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
VPS35Q96QK1 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS35Q96QK1 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.1■□□□□ 0.65
VPS35Q96QK1 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS35Q96QK1 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.1■□□□□ 0.65
VPS35Q96QK1 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS35Q96QK1 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS35Q96QK1 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS35Q96QK1 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS35Q96QK1 MESTP1-201ENST00000404287 994 ntBASIC19.1■□□□□ 0.65
VPS35Q96QK1 B3GAT3P1-201ENST00000471720 806 ntBASIC19.1■□□□□ 0.65
VPS35Q96QK1 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.1■□□□□ 0.65
VPS35Q96QK1 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS35Q96QK1 REXO1L10P-201ENST00000615707 1290 ntBASIC19.1■□□□□ 0.65
VPS35Q96QK1 REXO1L12P-201ENST00000622156 912 ntBASIC19.1■□□□□ 0.65
VPS35Q96QK1 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
VPS35Q96QK1 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS35Q96QK1 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS35Q96QK1 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS35Q96QK1 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms