Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 AC060766.5-201ENST00000590539 871 ntBASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4AQ8WYN0 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 SOX15-203ENST00000570788 1093 ntBASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 AC007613.1-201ENST00000572811 2597 ntBASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 IRX1P1-201ENST00000438849 1838 ntBASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4AQ8WYN0 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 AC120498.8-201ENST00000614275 531 ntBASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 AIRN-201ENST00000601203 4374 ntBASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 AC020763.4-201ENST00000623414 4170 ntBASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms