Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.77■□□□□ 0.6
LMX1AQ8TE12 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LMX1AQ8TE12 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LMX1AQ8TE12 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LMX1AQ8TE12 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LMX1AQ8TE12 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LMX1AQ8TE12 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.77■□□□□ 0.6
LMX1AQ8TE12 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
LMX1AQ8TE12 PRSS44-201ENST00000515154 1146 ntBASIC18.77■□□□□ 0.6
LMX1AQ8TE12 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LMX1AQ8TE12 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.77■□□□□ 0.6
LMX1AQ8TE12 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LMX1AQ8TE12 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
LMX1AQ8TE12 AC011558.1-201ENST00000623459 338 ntBASIC18.77■□□□□ 0.6
LMX1AQ8TE12 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.6
LMX1AQ8TE12 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.59
LMX1AQ8TE12 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
LMX1AQ8TE12 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.76■□□□□ 0.59
LMX1AQ8TE12 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 AC140113.3-201ENST00000605663 199 ntBASIC18.76■□□□□ 0.59
LMX1AQ8TE12 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 LINC01006-201ENST00000333319 2292 ntBASIC18.76■□□□□ 0.59
LMX1AQ8TE12 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.76■□□□□ 0.59
LMX1AQ8TE12 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 FAM8A6P-201ENST00000407496 1135 ntBASIC18.75■□□□□ 0.59
LMX1AQ8TE12 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1AQ8TE12 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.74■□□□□ 0.59
LMX1AQ8TE12 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 AL031432.5-201ENST00000641059 760 ntBASIC18.74■□□□□ 0.59
LMX1AQ8TE12 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 TCF3P1-201ENST00000423021 1937 ntBASIC18.74■□□□□ 0.59
LMX1AQ8TE12 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1AQ8TE12 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.73■□□□□ 0.59
LMX1AQ8TE12 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms