Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 AC005332.7-201ENST00000614046 2005 ntBASIC19.78■□□□□ 0.76
RTL3Q8N8U3 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RTL3Q8N8U3 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
RTL3Q8N8U3 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
RTL3Q8N8U3 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.78■□□□□ 0.76
RTL3Q8N8U3 NUDT16P1-203ENST00000513809 620 ntBASIC19.78■□□□□ 0.76
RTL3Q8N8U3 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.78■□□□□ 0.76
RTL3Q8N8U3 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.78■□□□□ 0.76
RTL3Q8N8U3 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RTL3Q8N8U3 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RTL3Q8N8U3 RCC2P6-201ENST00000526625 1557 ntBASIC19.78■□□□□ 0.76
RTL3Q8N8U3 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.78■□□□□ 0.76
RTL3Q8N8U3 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RTL3Q8N8U3 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RTL3Q8N8U3 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RTL3Q8N8U3 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
RTL3Q8N8U3 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RTL3Q8N8U3 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RTL3Q8N8U3 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
RTL3Q8N8U3 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.77■□□□□ 0.76
RTL3Q8N8U3 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.77■□□□□ 0.76
RTL3Q8N8U3 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.77■□□□□ 0.76
RTL3Q8N8U3 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
RTL3Q8N8U3 SNORA78-201ENST00000459373 127 ntBASIC19.77■□□□□ 0.76
RTL3Q8N8U3 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.77■□□□□ 0.76
RTL3Q8N8U3 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.77■□□□□ 0.76
RTL3Q8N8U3 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.77■□□□□ 0.76
RTL3Q8N8U3 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
RTL3Q8N8U3 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
RTL3Q8N8U3 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
RTL3Q8N8U3 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
RTL3Q8N8U3 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
RTL3Q8N8U3 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.77■□□□□ 0.75
RTL3Q8N8U3 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
RTL3Q8N8U3 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 TSPY7P-201ENST00000431358 1114 ntBASIC19.76■□□□□ 0.75
RTL3Q8N8U3 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 AC026471.5-201ENST00000615068 467 ntBASIC19.76■□□□□ 0.75
RTL3Q8N8U3 MIR6786-201ENST00000616843 113 ntBASIC19.76■□□□□ 0.75
RTL3Q8N8U3 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RTL3Q8N8U3 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 MESTP1-201ENST00000404287 994 ntBASIC19.75■□□□□ 0.75
RTL3Q8N8U3 AC004951.3-201ENST00000418645 1148 ntBASIC19.75■□□□□ 0.75
RTL3Q8N8U3 B3GAT3P1-201ENST00000471720 806 ntBASIC19.75■□□□□ 0.75
RTL3Q8N8U3 AC011506.1-201ENST00000474329 610 ntBASIC19.75■□□□□ 0.75
RTL3Q8N8U3 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 AC116562.2-201ENST00000507042 360 ntBASIC19.75■□□□□ 0.75
RTL3Q8N8U3 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
RTL3Q8N8U3 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.74■□□□□ 0.75
RTL3Q8N8U3 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
RTL3Q8N8U3 FSCN1P1-201ENST00000568912 1481 ntBASIC19.74■□□□□ 0.75
RTL3Q8N8U3 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RTL3Q8N8U3 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.74■□□□□ 0.75
RTL3Q8N8U3 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RTL3Q8N8U3 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
RTL3Q8N8U3 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.74■□□□□ 0.75
RTL3Q8N8U3 AL355355.2-201ENST00000442321 338 ntBASIC19.74■□□□□ 0.75
RTL3Q8N8U3 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms